View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19225_low_7 (Length: 433)
Name: NF19225_low_7
Description: NF19225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19225_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 23344548 - 23344326
Alignment:
| Q |
1 |
attcttgtata-tacaatattaatttcattttttaatgtatctgaaattgctatgatgacatataatttgaggaggaaagcaaaactcatattttcataa |
99 |
Q |
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| T |
23344548 |
attcttgtataatacaatattaatttcattttttaatgtatctgaaattggtatgatgacatataatttgagga---aagcaaaactcatattttcatac |
23344452 |
T |
|
| Q |
100 |
tcataagtcctacctaacgttgaaagagagacccggcggctggaattctaacatgacagtttctttggtctctatagttgactaacatagaattattttc |
199 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23344451 |
tcataagtcctacctaacgttgaaatagagacccggcggctggaattctaacatgacagtttctttggtctctatagttgactaacatagaattattttc |
23344352 |
T |
|
| Q |
200 |
tcatagctatggttttgtttttctttg |
226 |
Q |
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|||||||||||||||| |||||||||| |
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| T |
23344351 |
tcatagctatggtttt-tttttctttg |
23344326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 23382483 - 23382665
Alignment:
| Q |
1 |
attcttgtatatacaatattaatttcattttttaatgtatctgaaattgctatgatgacatataatttgaggaggaaagcaaaactcatattttcataat |
100 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
23382483 |
attcttgtatatacaatattaattt-attttttaatgtatctgaaattggtatgatgacatataatttgaggaggaaagcaaaactcatattttcatact |
23382581 |
T |
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| Q |
101 |
cataagtcctacctaacgttgaaagagagacccggcggctggaattctaacatgacagtttctttggtctctatagttgactaa |
184 |
Q |
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| T |
23382582 |
cataagtcctacctaacgttgaaatagagacccggcggctggaattctaacatgacagtttctttggtctctatagttgactaa |
23382665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 272 - 417
Target Start/End: Complemental strand, 23344218 - 23344073
Alignment:
| Q |
272 |
attttgaaacgaatggagtagtatttatttgaggtgaacatcaaatttgtgactaagtcacacaaagaattaacaaaatggcttcaccatcaagcattct |
371 |
Q |
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|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
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| T |
23344218 |
attttgaaacgaatggagtagtatttatttgaagttaacatcaaatttgtgactaagtcgcagaaagaattaacaaaatggcttcaccatcaagcattct |
23344119 |
T |
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| Q |
372 |
tgtaatcttatcatgtccactatattcccatcctacgatcgattcg |
417 |
Q |
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| T |
23344118 |
tgtaatcttatcatgtccactatattcccatcctacgatcgattcg |
23344073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 252 - 390
Target Start/End: Original strand, 23383058 - 23383196
Alignment:
| Q |
252 |
gtaattaatctgcgatatgtattttgaaacgaatggagtagtatttatttgaggtgaacatcaaatttgtgactaagtcacacaaagaattaacaaaatg |
351 |
Q |
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| T |
23383058 |
gtaattaatttgcgatatgtattttgaaacgaatggaatagtatttatttgtggtgaacatcaaatttgtgactaagtcgcacaaagaattaacaaaatg |
23383157 |
T |
|
| Q |
352 |
gcttcaccatcaagcattcttgtaatcttatcatgtcca |
390 |
Q |
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| T |
23383158 |
gcttcaccatgaagcattcttgtactcttatcatgtcca |
23383196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 226
Target Start/End: Original strand, 23382959 - 23382998
Alignment:
| Q |
187 |
tagaattattttctcatagctatggttttgtttttctttg |
226 |
Q |
| |
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|||||| |||||||||||||||||||||| |||||||||| |
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| T |
23382959 |
tagaataattttctcatagctatggttttttttttctttg |
23382998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 301
Target Start/End: Original strand, 47038104 - 47038137
Alignment:
| Q |
268 |
atgtattttgaaacgaatggagtagtatttattt |
301 |
Q |
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||||||||||||||| |||||||||||||||||| |
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| T |
47038104 |
atgtattttgaaacggatggagtagtatttattt |
47038137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 294
Target Start/End: Complemental strand, 36341649 - 36341617
Alignment:
| Q |
262 |
tgcgatatgtattttgaaacgaatggagtagta |
294 |
Q |
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||||| ||||||||||||||||||||||||||| |
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| T |
36341649 |
tgcgacatgtattttgaaacgaatggagtagta |
36341617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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