View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19226_high_2 (Length: 492)
Name: NF19226_high_2
Description: NF19226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19226_high_2 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 205 - 492
Target Start/End: Original strand, 20693034 - 20693327
Alignment:
| Q |
205 |
aagagcaattagaaagcccaatctgaaaagcccaccacttccttcttcttcttccaaacagtttcctcttgcaatatcaaccgtccatcaccaactctga |
304 |
Q |
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| T |
20693034 |
aagagcaattagaaagcccaatctgaaaagcccagcacttccttcttcttcttccaaacagtttcctcttgcaatatcaaccgtccatcaccaactctga |
20693133 |
T |
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| Q |
305 |
aac------ccaaaactttcttcaaaccccatctcagaacaaccccaatgttttccaccactatcacaaatggaagaatcccctcaaaaccccactttcc |
398 |
Q |
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| T |
20693134 |
aacccaaacccaaaactttcttcaaaccccatctcagaacaaccccaatgttttccaccactatcacaaatggaagaatcccctcaaaaccccactttcc |
20693233 |
T |
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| Q |
399 |
acaacacttccaaatccgttgcggaatccgcgaaatccgcgaccgaatcaacagcgtcaaaacaactcaaaaaatcaccgaagctatgaaactc |
492 |
Q |
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| T |
20693234 |
acaacacttccaaatccgttgcggaatacgcgaaatccgcgaccgaatcaacagcgtcaaaacaactcaaaaaatcaccgaagctatgaaactc |
20693327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 69 - 170
Target Start/End: Original strand, 20692904 - 20693005
Alignment:
| Q |
69 |
aggtttttgtttctgttttggtataagacataatgctacgacaaatacaattaacgaaccacagtcaaccgtagagaaatgaacggtagttaactgctgt |
168 |
Q |
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| T |
20692904 |
aggttgttatttctattttggtataagacataatgctacgacaaatacaattaacgaaccaaagtcaactgtagagaagtgaacggtagttaactgccgt |
20693003 |
T |
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| Q |
169 |
tg |
170 |
Q |
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|| |
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| T |
20693004 |
tg |
20693005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 20692766 - 20692827
Alignment:
| Q |
1 |
ttaggtttgtagttatcaaataacatttttatttttgttgcaataccttcatgagataactt |
62 |
Q |
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| T |
20692766 |
ttagatttatagttatcaaataacatttttatttttgttgtaataccttcaggagataactt |
20692827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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