View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19226_high_3 (Length: 405)
Name: NF19226_high_3
Description: NF19226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19226_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 378; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 6 - 391
Target Start/End: Original strand, 39737456 - 39737841
Alignment:
| Q |
6 |
attgaagctcaacagtcaaaaggggaaaatgaaggtaccagcaaatccaacacttcaaaattagtcagcatagattctgaagaatttgatgctatggtag |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
39737456 |
attgaagctcaacagtcaaaaggggaaaatgaaggtaccagcaaatccaacacttcaaaattagtcagcatagactctgaagaatttgatgctatggtag |
39737555 |
T |
|
| Q |
106 |
atgaggatgtcattgcagcaattgacagagttttatcggaagggattactctttccttaaaatcccagcattctgtccaaggacgagaatactcaaaacg |
205 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39737556 |
atgaggatgtcattgcggcaattgacagagttttatcggaagggattactctttccttaaaatcccagcattctgtccaaggacgagaatactcaaaacg |
39737655 |
T |
|
| Q |
206 |
ggatcccaatctccctgagcaacttcttcaggaattaagggatattgcttttaaaggagacttggttgaaaaacttaaagaaggtctcacttctaaagtt |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39737656 |
ggatcccaatctccctgagcaacttcttcaggaattaagggatattgcttttaaaggagacttggttgaaaaacttaaagaaggtctcacttctaaagtt |
39737755 |
T |
|
| Q |
306 |
aatttcaacgcagtcaaggaaaaaattgacgctaatgctgatgcattttcctctctccaattagaacaagtcggtgctgttgttaa |
391 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39737756 |
aatttcaacgcagtcaaggaaaaaattgacgctaatgctgatgcattttcctctctccaattagaacaagtcggtgctgttgttaa |
39737841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 34 - 391
Target Start/End: Complemental strand, 39856612 - 39856255
Alignment:
| Q |
34 |
atgaaggtaccagcaaatccaacacttcaaaattagtcagcatagattctgaagaatttgatgctatggtagatgaggatgtcattgcagcaattgacag |
133 |
Q |
| |
|
|||||||||||| |||| ||||||||| |||||| ||||||| ||| | ||||| ||||||||||| |||||||||||||||||| || || ||||| |
|
|
| T |
39856612 |
atgaaggtaccaacaaagccaacactttaaaatttgtcagcaaagacttgaaagaaattgatgctatgatagatgaggatgtcattggtgcgatcgacag |
39856513 |
T |
|
| Q |
134 |
agttttatcggaagggattactctttccttaaaatcccagcattctgtccaaggacgagaatactcaaaacgggatcccaatctccctgagcaacttctt |
233 |
Q |
| |
|
||| ||||| |||||||||||||||||||||||||| || |||||||| ||| || |||| ||| || | ||||||||| ||| |||||||||||| |
|
|
| T |
39856512 |
agtgttatcagaagggattactctttccttaaaatctcaccattctgttcaaaaacaagaagtctcgaagctggatcccaacttccaagagcaacttctt |
39856413 |
T |
|
| Q |
234 |
caggaattaagggatattgcttttaaaggagacttggttgaaaaacttaaagaaggtctcacttctaaagttaatttcaacgcagtcaaggaaaaaattg |
333 |
Q |
| |
|
|||||| |||||||| |||||||||| |||||||||||||||| ||||| ||||||||||| ||||||||| ||||||| |||||| ||||||||||| |
|
|
| T |
39856412 |
atggaattgagggatatcgcttttaaagaagacttggttgaaaaatttaaacaaggtctcactcctaaagttagtttcaacacagtcatggaaaaaattg |
39856313 |
T |
|
| Q |
334 |
acgctaatgctgatgcattttcctctctccaattagaacaagtcggtgctgttgttaa |
391 |
Q |
| |
|
| ||||||| ||| || || |||| |||| ||||||||||||||| ||||||||| |
|
|
| T |
39856312 |
aagctaatgttgacatgttctcttctcaccaactagaacaagtcggtgttgttgttaa |
39856255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 91 - 391
Target Start/End: Complemental strand, 39863757 - 39863454
Alignment:
| Q |
91 |
ttgatgctatggtagatgaggatgtcattgcagcaattgacagagttttatcggaagggattactctttccttaaaatcccagcattctgtccaaggacg |
190 |
Q |
| |
|
||||||||||| ||| ||||||||| ||||| ||||| |||| ||||||||| ||||||| ||| |||| ||| ||| ||||||||||| ||||||| |
|
|
| T |
39863757 |
ttgatgctatgataggtgaggatgttattgctgcaatcgacaaagttttatccgaagggaataccatttcattacaatttcagcattctgttcaaggaca |
39863658 |
T |
|
| Q |
191 |
agaata---ctcaaaacgggatcccaatctccctgagcaacttcttcaggaattaagggatattgcttttaaaggagacttggttgaaaaacttaaagaa |
287 |
Q |
| |
|
|||| | | |||||| |||||||| |||||| ||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||| | |||||| |
|
|
| T |
39863657 |
agaagaggtcgcaaaactggatcccagcctccctaagcaacttcttcaggaattgagggatattgcctttaaagaagacttggttgaaaaattaaaagaa |
39863558 |
T |
|
| Q |
288 |
ggtctcacttctaaagttaatttcaacgcagtcaaggaaaaaattgacgctaatgctgatgcattttcctctctccaattagaacaagtcggtgctgttg |
387 |
Q |
| |
|
||| || || |||||||||| ||||| ||||||||||||||||||| ||||||||||| || || | |||| |||||||||||||| |||| ||||| |
|
|
| T |
39863557 |
ggtatctctcctaaagttaacttcaatacagtcaaggaaaaaattgatgctaatgctgacgctttcacgtctcgtcaattagaacaagttggtgttgttg |
39863458 |
T |
|
| Q |
388 |
ttaa |
391 |
Q |
| |
|
|||| |
|
|
| T |
39863457 |
ttaa |
39863454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 85 - 377
Target Start/End: Original strand, 38980381 - 38980673
Alignment:
| Q |
85 |
aagaatttgatgctatggtagatgaggatgtcattgcagcaattgacagagttttatcggaagggattactctttccttaaaatcccagcattctgtcca |
184 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||| | || ||||||||||||| ||||||||||| ||||| ||||||| |||||||||||||| |
|
|
| T |
38980381 |
aagaagttgatgctatgatagatgaggatgtcattgcttctatcaacagagttttatcagaagggattaccatttccgtaaaatctcagcattctgtcca |
38980480 |
T |
|
| Q |
185 |
aggacgagaatactcaaaacgggatcccaatctccctgagcaacttcttcaggaattaagggatattgcttttaaaggagacttggttgaaaaacttaaa |
284 |
Q |
| |
|
|| || |||| |||||||| | ||||||| ||||||||| |||||||||||||||| ||||||||| ||| || ||||||||||||||||| | |
|
|
| T |
38980481 |
agaacaagaagtctcaaaactgtatcccaacctccctgagaaacttcttcaggaattgtgggatattgtctttgaatgagacttggttgaaaaattattt |
38980580 |
T |
|
| Q |
285 |
gaaggtctcacttctaaagttaatttcaacgcagtcaaggaaaaaattgacgctaatgctgatgcattttcctctctccaattagaacaagtc |
377 |
Q |
| |
|
||||||||| | |||||| || ||||| ||||||||||||||| |||||||||||||||| ||||||||| |||| ||||||||||| |
|
|
| T |
38980581 |
gaaggtctctttactaaagacaacttcaatgcagtcaaggaaaaatttgacgctaatgctgacttgttttcctctaaccaactagaacaagtc |
38980673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 64 - 164
Target Start/End: Complemental strand, 39897156 - 39897056
Alignment:
| Q |
64 |
aattagtcagcatagattctgaagaatttgatgctatggtagatgaggatgtcattgcagcaattgacagagttttatcggaagggattactctttcctt |
163 |
Q |
| |
|
||||| |||||||||| | |||||| ||||||||||| ||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
39897156 |
aattattcagcatagacttggaagaaattgatgctatgatagatgaggatgtcattgctgcaatcgacagagttttatcagaagggattactctttcctt |
39897057 |
T |
|
| Q |
164 |
a |
164 |
Q |
| |
|
| |
|
|
| T |
39897056 |
a |
39897056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 346
Target Start/End: Complemental strand, 39846712 - 39846582
Alignment:
| Q |
216 |
ctccctgagcaacttcttcaggaattaagggatattgcttttaaaggagacttggttgaaaaacttaaagaaggtctcacttctaaagttaatttcaacg |
315 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||| || |||||| ||||||||||| |||| ||||| |||||| || | |||| || ||||| | |
|
|
| T |
39846712 |
ctccctgatcaacttcttcaggaattgagggatatcgcctttaaaaaagacttggttgtaaaatttaaactaggtcttgctcgtgaagtaaacttcaatg |
39846613 |
T |
|
| Q |
316 |
cagtcaaggaaaaaattgacgctaatgctga |
346 |
Q |
| |
|
||||||||| ||||| || ||||||||||| |
|
|
| T |
39846612 |
tagtcaaggataaaatcgaagctaatgctga |
39846582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 79
Target Start/End: Complemental strand, 39863979 - 39863934
Alignment:
| Q |
34 |
atgaaggtaccagcaaatccaacacttcaaaattagtcagcataga |
79 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||| ||| ||||||| |
|
|
| T |
39863979 |
atgaaggtaccagcaaagccaacaattcaaaattcgtcggcataga |
39863934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 101; Significance: 6e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 37 - 285
Target Start/End: Complemental strand, 32827091 - 32826843
Alignment:
| Q |
37 |
aaggtaccagcaaatccaacacttcaaaattagtcagcatagattctgaagaatttgatgctatggtagatgaggatgtcattgcagcaattgacagagt |
136 |
Q |
| |
|
|||||||||||||| |||||||||||| || ||||||| ||| | ||||||| ||||||||||| |||||||||| || |||| |||||||||||||| |
|
|
| T |
32827091 |
aaggtaccagcaaaggcaacacttcaaagtttgtcagcaaagactttgaagaaattgatgctatgatagatgaggacgttgttgctgcaattgacagagt |
32826992 |
T |
|
| Q |
137 |
tttatcggaagggattactctttccttaaaatcccagcattctgtccaaggacgagaatactcaaaacgggatcccaatctccctgagcaacttcttcag |
236 |
Q |
| |
|
||||| |||||||||||| || |||||||||| | ||||||||| ||||||| | || ||| |||| |||||||| ||| |||||||||| ||||| |
|
|
| T |
32826991 |
tttattagaagggattacttttcccttaaaatctcggcattctgtacaaggacaacaagcctcgaaactagatcccaacctctttgagcaactttttcag |
32826892 |
T |
|
| Q |
237 |
gaattaagggatattgcttttaaaggagacttggttgaaaaacttaaag |
285 |
Q |
| |
|
||||| |||||||| || ||||||| ||||||||||||||| |||||| |
|
|
| T |
32826891 |
gaattgagggatatcgcctttaaagaggacttggttgaaaaatttaaag |
32826843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 9e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 171 - 391
Target Start/End: Original strand, 53495246 - 53495467
Alignment:
| Q |
171 |
cagcattctgtccaaggacgagaata---ctcaaaacgggatcccaatctccctgagcaacttcttcaggaattaagggatattgcttttaaaggagact |
267 |
Q |
| |
|
|||||||||||| |||||| |||| | | |||||| ||||||||| |||||| ||||||||||||||||||| |||||||| | ||||||| ||| |
|
|
| T |
53495246 |
cagcattctgtcgaaggacaagaagaagtcacaaaactggatcccaacctccctaagcaacttcttcaggaattgagggatatcacctttaaag---act |
53495342 |
T |
|
| Q |
268 |
tggttgaaaaac-ttaaagaaggtctcacttctaaagttaatttcaacgcagtcaaggaaaaaattgacgctaatgctgatgcattttcctctctccaat |
366 |
Q |
| |
|
||||||||||| ||||||||||||||||| | |||||||| ||||| ||| |||||| |||||||||||||||||||||||| || ||||||| |||| |
|
|
| T |
53495343 |
tggttgaaaaaaattaaagaaggtctcactccaaaagttaacttcaatgcaatcaaggtaaaaattgacgctaatgctgatgcgttctcctctcagcaat |
53495442 |
T |
|
| Q |
367 |
tagaacaagtcggtgctgttgttaa |
391 |
Q |
| |
|
|||||||| | |||| ||||||||| |
|
|
| T |
53495443 |
tagaacaaattggtgttgttgttaa |
53495467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University