View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19226_low_1 (Length: 506)
Name: NF19226_low_1
Description: NF19226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19226_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 15 - 489
Target Start/End: Original strand, 4270266 - 4270740
Alignment:
| Q |
15 |
agttcttgtatcgcctttttagtcctcgcaaattgcaaaaattatgtctatagttgtgatttttggggactaaaaagtggttacatagattgaaaacaag |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4270266 |
agttcttgtatcgcctttttagtcctcgcaaattgcaaaaattgtgtctatagttgtgatttttggggactaaaaagtggttacatagattgaaaacaag |
4270365 |
T |
|
| Q |
115 |
aaaatgtaaattttgtgttgattaagagttgtctgaaaatttgttgcnnnnnnnnccctgttctgttttttgtatgtctagatggtgaaaaagggcttcg |
214 |
Q |
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| T |
4270366 |
aaaatgtaaattttgtgttgattaagagttgtctgaaaatttgttgcttttttttccctgttctgttttttgtatgtctagatggtgaaaaagggcttcg |
4270465 |
T |
|
| Q |
215 |
tttagttccatttttgagtaaattcagttctgtggagatggttggtaagaaagggtgtgttccaatcattgactataagcaattagaaaaagccactgga |
314 |
Q |
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|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4270466 |
tttagttccatttttgagtaaattcagttctgtgaggttggttggtaagaaagggtgtgttccaatcattgactataagcaattagaaaaagccactgga |
4270565 |
T |
|
| Q |
315 |
aatttcaaggaaagtaacatcataggtgagggtggttttggatgtgtttacaaggctaggttggatgataatttagatgttgccatcaagaagttgaact |
414 |
Q |
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| T |
4270566 |
aatttcaaggaaagtaacatcataggtgagggtggttttggatgtgtttacaaggctaggttggatgataatttagatgttgccatcaagaagttgaact |
4270665 |
T |
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| Q |
415 |
gtgaatgtcaatatgctgagagagaatttgaggtaattcttgctaataatttatttatttattttgttgacttaa |
489 |
Q |
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| T |
4270666 |
gtgaatgtcaatatgctgagagagaatttgaggtaattcttgctaataatttatttatttattttgttgacttaa |
4270740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 15 - 489
Target Start/End: Original strand, 2806611 - 2807084
Alignment:
| Q |
15 |
agttcttgtatcgcctttttagtcctcgcaaattgcaaaaattatgtctatagttgtgatttttggggactaaaaagtggttacatagattgaaaacaag |
114 |
Q |
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||||||||||||||||||||||||||| |||||||||||| || |||||||||||||||||||| ||||||||||| | ||||||||||||||||||||| |
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| T |
2806611 |
agttcttgtatcgcctttttagtcctcacaaattgcaaaa-ttgtgtctatagttgtgatttttagggactaaaaattagttacatagattgaaaacaag |
2806709 |
T |
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| Q |
115 |
aaaatgtaaattttgtgttgattaagagttgtctgaaaatttgttgcnnnnnnnnccctgttctgttttttgtatgtctagatggtgaaaaagggcttcg |
214 |
Q |
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| T |
2806710 |
aaaatgtaaattttgtgttgattaagagttgtctgaaaatttgttgcttttttttccctgttctgttttttgtacgtctagatggtgaaaaagggcttgg |
2806809 |
T |
|
| Q |
215 |
tttagttccatttttgagtaaattcagttctgtggagatggttggtaagaaagggtgtgttccaatcattgactataagcaattagaaaaagccactgga |
314 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2806810 |
tttagttccatttttgagtaaattcagttctgtgaagatggttggtaagaaagggtgtgttccaatcattgactataagcaattagaaaaagccactgga |
2806909 |
T |
|
| Q |
315 |
aatttcaaggaaagtaacatcataggtgagggtggttttggatgtgtttacaaggctaggttggatgataatttagatgttgccatcaagaagttgaact |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2806910 |
aatttcaaggaaagtaacatcataggtgagggtggttttggatgtgtttacaaggctaggttggatgataatttagatgttgccatcaagaagttgaact |
2807009 |
T |
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| Q |
415 |
gtgaatgtcaatatgctgagagagaatttgaggtaattcttgctaataatttatttatttattttgttgacttaa |
489 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2807010 |
gtgaatgtcaatatgctgagagagaatttgaggtaattcttgctaataatttatttatttattttgttgacttaa |
2807084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 267 - 406
Target Start/End: Complemental strand, 49125059 - 49124920
Alignment:
| Q |
267 |
gggtgtgttccaatcattgactataagcaattagaaaaagccactggaaatttcaaggaaagtaacatcataggtgagggtggttttggatgtgtttaca |
366 |
Q |
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|||||||||||||| ||||| || |||||| |||||||| | || | ||||| |||||||||||||| | |||| |||||||||||||||||||||| |
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| T |
49125059 |
gggtgtgttccaataattgattacaagcaaatagaaaaatcgaccgacaattttcaggaaagtaacatcttgggtgtaggtggttttggatgtgtttaca |
49124960 |
T |
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| Q |
367 |
aggctaggttggatgataatttagatgttgccatcaagaa |
406 |
Q |
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| T |
49124959 |
aggcacaatttgatgataatttggatgttgctgtcaagaa |
49124920 |
T |
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