View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19226_low_10 (Length: 220)
Name: NF19226_low_10
Description: NF19226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19226_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 8e-85; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 46 - 204
Target Start/End: Original strand, 35262870 - 35263028
Alignment:
| Q |
46 |
gttacagaaaagacttcaatgtggtggaggaattagtaagaaaggtgaagagtcaaaaaaggggaatttctgagggtaatgatgaggaagtaaatgttga |
145 |
Q |
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| T |
35262870 |
gttacagaaaagacttcaatgtggtggaggaattagtaagaaaggtgaagagtcaaaaaaggggaatttctgagggtaatgatgaggaagtaaatgttga |
35262969 |
T |
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| Q |
146 |
gaattgttcatcttctgataatgatgatgaggagatggtgagagaggggaaggataaaa |
204 |
Q |
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| T |
35262970 |
gaattgttcatcttctgataatgatgatgaggagatggtgagagaggggaaggataaaa |
35263028 |
T |
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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 172
Target Start/End: Original strand, 35263034 - 35263098
Alignment:
| Q |
108 |
ggaatttctgagggtaatgatgaggaagtaaatgttgagaattgttcatcttctgataatgatga |
172 |
Q |
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| T |
35263034 |
ggaatttctgagaggaataatgagaaagtaaatgttgagaatagtccatcttatgataatgatga |
35263098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 54 - 204
Target Start/End: Complemental strand, 16992437 - 16992287
Alignment:
| Q |
54 |
aaagacttcaatgtggtggaggaattagtaagaaaggtgaagagtcaaaaaaggggaatttctgagggtaatgatgaggaagtaaatgttgagaattgtt |
153 |
Q |
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| T |
16992437 |
aaagatttcaatgtggtggaggagttggtaagaaaggtgaagagtcaaaaaaggggaatttctgagagtaataatgaggaagtaaatgttgagaatagtt |
16992338 |
T |
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| Q |
154 |
catcttctgataatgatgatgaggagatggtgagagaggggaaggataaaa |
204 |
Q |
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| T |
16992337 |
catcttctgataatgatgatgaggagatggtgagagaggggaaggataaaa |
16992287 |
T |
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