View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19226_low_5 (Length: 271)

Name: NF19226_low_5
Description: NF19226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19226_low_5
NF19226_low_5
[»] chr3 (6 HSPs)
chr3 (106-253)||(44364987-44365133)
chr3 (1-64)||(44365131-44365194)
chr3 (99-212)||(22935408-22935522)
chr3 (60-170)||(27296783-27296893)
chr3 (60-97)||(44364555-44364592)
chr3 (93-208)||(48343286-48343402)
[»] chr4 (2 HSPs)
chr4 (60-179)||(53449214-53449334)
chr4 (61-97)||(53449894-53449930)
[»] chr5 (4 HSPs)
chr5 (61-212)||(13590619-13590771)
chr5 (61-178)||(13580495-13580613)
chr5 (123-163)||(5654990-5655030)
chr5 (60-163)||(13589502-13589606)
[»] chr7 (1 HSPs)
chr7 (127-197)||(4879918-4879988)
[»] chr6 (2 HSPs)
chr6 (60-212)||(23117516-23117668)
chr6 (126-208)||(23110775-23110857)
[»] chr8 (2 HSPs)
chr8 (128-199)||(44890321-44890392)
chr8 (95-139)||(39583353-39583397)
[»] chr1 (1 HSPs)
chr1 (166-208)||(25154431-25154473)


Alignment Details
Target: chr3 (Bit Score: 128; Significance: 3e-66; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 106 - 253
Target Start/End: Complemental strand, 44365133 - 44364987
Alignment:
Q  106 aaatatcgaaatatccatcgacagttaactgccgcggaagttaattgacggtagttaattaccgcggaacttcgacaattaattgctgcggagcttcaaa 205  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  44365133 aaatatcgaaatatccatcggcagttaactgccgcggaagttaattgacggtagttaattaccgcggaacttcggcaattaattgctgc-gagcttcaaa 44365035  T
Q  206 cctgaaaatggcaaatacaaaccatatgatctccgtcaaactactgag 253  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  44365034 cctgaaaatggcaaatacaaaccatatgatctccgtcaaaccactgag 44364987  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 44365194 - 44365131
Alignment:
Q  1 caaatatcactactcttttaaaaaccgtttctagtgaacaatccccggtgaatcttgtgtgaaa 64  Q
    |||||||||| ||||||||||||||||||| ||||||||||||| | |||||||||||||||||    
T  44365194 caaatatcaccactcttttaaaaaccgtttatagtgaacaatccacagtgaatcttgtgtgaaa 44365131  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 99 - 212
Target Start/End: Original strand, 22935408 - 22935522
Alignment:
Q  99 accagtaaaatatcgaaatatccatcga-cagttaactgccgcggaagttaattgacggtagttaattaccgcggaacttcgacaattaattgctgcgga 197  Q
    ||||||||||||| ||||||||| |  | |||||||||||||||||||||||| | ||| |||||| ||||||||||||||| || |||| ||| ||| |    
T  22935408 accagtaaaatattgaaatatcccttcagcagttaactgccgcggaagttaatcggcggcagttaactaccgcggaacttcggcagttaactgccgcgaa 22935507  T
Q  198 gcttcaaacctgaaa 212  Q
      |||||| ||||||    
T  22935508 aattcaaatctgaaa 22935522  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 170
Target Start/End: Original strand, 27296783 - 27296893
Alignment:
Q  60 tgaaaattgttgttcacatatagtatatgactaaaaaataccagtaaaatatcgaaata-tccatcgacagttaactgccgcggaagttaattgacggta 158  Q
    ||||||||| |||||| | |||||||| | |||||||| |||||||||||  | ||||| ||| ||| |||||||||||| ||||||||||  |||||||    
T  27296783 tgaaaattgctgttcaaacatagtatagg-ctaaaaaacaccagtaaaatgccaaaatactccgtcggcagttaactgccacggaagttaaccgacggta 27296881  T
Q  159 gttaattaccgc 170  Q
    ||||| ||||||    
T  27296882 gttaactaccgc 27296893  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 97
Target Start/End: Original strand, 44364555 - 44364592
Alignment:
Q  60 tgaaaattgttgttcacatatagtatatgactaaaaaa 97  Q
    ||||||||| ||||||||||||||||||| ||||||||    
T  44364555 tgaaaattgctgttcacatatagtatatggctaaaaaa 44364592  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 208
Target Start/End: Original strand, 48343286 - 48343402
Alignment:
Q  93 aaaaataccagtaaaatatcgaaatat-ccatcgacagttaactgccgcggaagttaattgacggtagttaattaccgcggaacttcgacaattaattgc 191  Q
    ||||| |||||||||||| | |||| | || |||||| |||||||| |||||| ||||  | ||   ||||| ||||  |||||||||||| |||| |||    
T  48343286 aaaaacaccagtaaaataccaaaatgttccttcgacaattaactgcagcggaaattaaccggcgacggttaactaccatggaacttcgacagttaactgc 48343385  T
Q  192 tgcggagcttcaaacct 208  Q
     ||||||||||||||||    
T  48343386 cgcggagcttcaaacct 48343402  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 60 - 179
Target Start/End: Original strand, 53449214 - 53449334
Alignment:
Q  60 tgaaaattgttgttcacatatagtatatgactaaaaaataccagtaaaatatcgaaatatc-catcgacagttaactgccgcggaagttaattgacggta 158  Q
    ||||||||| |||||||| |||||||||| |||||||| | |||||||||| ||||||| | | |||| |||||||||||||||||||||| ||  || |    
T  53449214 tgaaaattgctgttcacacatagtatatggctaaaaaacatcagtaaaataccgaaatacctcctcgatagttaactgccgcggaagttaactggaggaa 53449313  T
Q  159 gttaattaccgcggaacttcg 179  Q
    ||||| | |||||||||||||    
T  53449314 gttaactgccgcggaacttcg 53449334  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 97
Target Start/End: Complemental strand, 53449930 - 53449894
Alignment:
Q  61 gaaaattgttgttcacatatagtatatgactaaaaaa 97  Q
    ||||||||||||||||||||||||||||  |||||||    
T  53449930 gaaaattgttgttcacatatagtatatggttaaaaaa 53449894  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 61 - 212
Target Start/End: Complemental strand, 13590771 - 13590619
Alignment:
Q  61 gaaaattgttgttcacatatagtatatgactaaaaaataccagtaaaatatcgaaata-tccatcgacagttaactgccgcggaagttaattgacggtag 159  Q
    |||| |||||||||||| ||||| | ||||| ||| | ||| ||||||||  |||||| ||| ||||||||||| |||||||||||||||  | ||||||    
T  13590771 gaaatttgttgttcacacatagtgtttgactgaaacacaccggtaaaatacagaaatactccttcgacagttaattgccgcggaagttaaccggcggtag 13590672  T
Q  160 ttaattaccgcggaacttcgacaattaattgctgcggagcttcaaacctgaaa 212  Q
    |||| |||  |||||||||  || |||| ||| || || ||| ||||||||||    
T  13590671 ttaactacaacggaacttcagcagttaactgccgcagaacttaaaacctgaaa 13590619  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 61 - 178
Target Start/End: Original strand, 13580495 - 13580613
Alignment:
Q  61 gaaaattgttgttcacatatagtatatgactaaaaaataccagtaaaatatcgaaata-tccatcgacagttaactgccgcggaagttaattgacggtag 159  Q
    |||| |||||||||||| ||||| | ||||| ||| | ||| |||||||| ||||||| ||| ||| ||||||| |||||||||||||||  | ||||||    
T  13580495 gaaatttgttgttcacacatagtgtttgactgaaacacaccggtaaaataccgaaatactccttcggcagttaattgccgcggaagttaaccggcggtag 13580594  T
Q  160 ttaattaccgcggaacttc 178  Q
    |||| |||  |||||||||    
T  13580595 ttaactacaacggaacttc 13580613  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 163
Target Start/End: Original strand, 5654990 - 5655030
Alignment:
Q  123 tcgacagttaactgccgcggaagttaattgacggtagttaa 163  Q
    |||||||||||||| ||||||||| ||| ||||||||||||    
T  5654990 tcgacagttaactgtcgcggaagtcaatcgacggtagttaa 5655030  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 163
Target Start/End: Original strand, 13589502 - 13589606
Alignment:
Q  60 tgaaaattgttgttcacatatagtatatgactaaaaaataccagtaaaatatcgaaatatccat-cgacagttaactgccgcggaagttaattgacggta 158  Q
    ||||| || ||||||||||||||| | || || ||| | || ||||||||| | |||||||| | || ||||||||| ||||| |||||||  |||||||    
T  13589502 tgaaatttattgttcacatatagtgtttggctgaaacacactagtaaaataccaaaatatcccttcggcagttaactaccgcgaaagttaaccgacggta 13589601  T
Q  159 gttaa 163  Q
    |||||    
T  13589602 gttaa 13589606  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 127 - 197
Target Start/End: Complemental strand, 4879988 - 4879918
Alignment:
Q  127 cagttaactgccgcggaagttaattgacggtagttaattaccgcggaacttcgacaattaattgctgcgga 197  Q
    ||||||||||  | ||||||||| ||||||||||||| ||||||||||||||| ||||||| | |||||||    
T  4879988 cagttaactgttgtggaagttaactgacggtagttaactaccgcggaacttcggcaattaactactgcgga 4879918  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 60 - 212
Target Start/End: Complemental strand, 23117668 - 23117516
Alignment:
Q  60 tgaaaattgttgttcacatatagtatatgactaaaaaataccagtaaaatatcgaaatatccatcgacagttaactgccgcggaagttaattgacggtag 159  Q
    |||||||||||||||| | |||||||||| |||| ||| ||| |||||||| ||||||| || |   ||||||| |  ||||||||||||  |  ||||     
T  23117668 tgaaaattgttgttcatacatagtatatggctaagaaacaccggtaaaataccgaaatacccctttgcagttaattatcgcggaagttaaccggtggtaa 23117569  T
Q  160 ttaattaccgcggaacttcgacaattaattgctgcggagcttcaaacctgaaa 212  Q
    |||| | ||||||||||||| || |||| | | | ||| ||||||||||||||    
T  23117568 ttaactcccgcggaacttcggcagttaactaccgtggaccttcaaacctgaaa 23117516  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 208
Target Start/End: Original strand, 23110775 - 23110857
Alignment:
Q  126 acagttaactgccgcggaagttaattgacggtagttaattaccgcggaacttcgacaattaattgctgcggagcttcaaacct 208  Q
    |||| ||| |||||||||||||||  | |||||||||| |||| |||||||||| || |||| | | ||||||||||||||||    
T  23110775 acagctaaatgccgcggaagttaaccggcggtagttaactaccacggaacttcggcagttaactaccgcggagcttcaaacct 23110857  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 128 - 199
Target Start/End: Original strand, 44890321 - 44890392
Alignment:
Q  128 agttaactgccgcggaagttaattgacggtagttaattaccgcggaacttcgacaattaattgctgcggagc 199  Q
    ||||||||| ||||||||||||  |||  ||||||| ||||||||||||||| || |||| ||| |||||||    
T  44890321 agttaactgtcgcggaagttaaccgacaatagttaactaccgcggaacttcggcagttaactgccgcggagc 44890392  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 139
Target Start/End: Complemental strand, 39583397 - 39583353
Alignment:
Q  95 aaataccagtaaaatatcgaaatatccatcgacagttaactgccg 139  Q
    |||||| |||||| |||  ||||||||||||||||||||||||||    
T  39583397 aaatacgagtaaattattcaaatatccatcgacagttaactgccg 39583353  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 208
Target Start/End: Complemental strand, 25154473 - 25154431
Alignment:
Q  166 accgcggaacttcgacaattaattgctgcggagcttcaaacct 208  Q
    ||||||||||||||||| |||| |||||| |||||||||||||    
T  25154473 accgcggaacttcgacagttaactgctgcagagcttcaaacct 25154431  T

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