View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19226_low_6 (Length: 246)

Name: NF19226_low_6
Description: NF19226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19226_low_6
NF19226_low_6
[»] chr4 (14 HSPs)
chr4 (18-204)||(48170395-48170581)
chr4 (32-246)||(48147502-48147716)
chr4 (46-231)||(48852756-48852944)
chr4 (39-239)||(45371864-45372067)
chr4 (39-230)||(49043994-49044185)
chr4 (39-218)||(49048392-49048571)
chr4 (145-227)||(48705190-48705272)
chr4 (145-227)||(48870722-48870804)
chr4 (145-227)||(48886408-48886490)
chr4 (197-241)||(48156223-48156267)
chr4 (143-227)||(48876024-48876108)
chr4 (192-241)||(47208126-47208175)
chr4 (197-234)||(48898963-48899000)
chr4 (139-211)||(48903123-48903195)
[»] chr8 (1 HSPs)
chr8 (94-228)||(4031710-4031844)
[»] chr6 (1 HSPs)
chr6 (46-180)||(21015899-21016033)
[»] chr3 (2 HSPs)
chr3 (85-230)||(47451705-47451850)
chr3 (99-241)||(11005716-11005858)
[»] chr5 (1 HSPs)
chr5 (145-239)||(29688300-29688394)


Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 48170581 - 48170395
Alignment:
Q  18 cttagtttattgttattcgcgtttggaatttttctcattaagagataatacctggaaagtactagagggtactcgcttcccttatatgaatgactatgat 117  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48170581 cttagttcattgttattcgcgtttggaatttttctcattaagagataatacctggaaagtactagagggtactcgcttcccttatatgaatgactatgat 48170482  T
Q  118 gatcccagagtagggtcactttttaacggggttattcattggttagcttatcatcatgatttagtgaagaatgctattcttgcattt 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48170481 gatcccagagtagggtcactttttaacggggttattcattggttagcttatcatcatgatttagtgaagaatgctattcttgcattt 48170395  T

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Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 32 - 246
Target Start/End: Complemental strand, 48147716 - 48147502
Alignment:
Q  32 attcgcgtttggaatttttctcattaagagataatacctggaaagtactagagggtactcgcttcccttatatgaatgactatgatgatcccagagtagg 131  Q
    ||||||| ||||| |||||||| || ||||||| ||  ||||||| ||| ||||||||||  ||||||||||||  | ||  |||||| |  ||||||||    
T  48147716 attcgcgattggagtttttctcgttgagagatagtatgtggaaagaacttgagggtactccgttcccttatatgctttaccctgatgagcatagagtagg 48147617  T
Q  132 gtcactttttaacggggttattcattggttagcttatcatcatgatttagtgaagaatgctattcttgcatttgatttaacggaaaggaaacttttagag 231  Q
    |||||||||||  |||| |||||||||||| |||| |||  |||||||||  | | ||| |||| ||||||||||||||| |||||||| ||||||||||    
T  48147616 gtcactttttagtggggctattcattggttggcttttcacaatgatttagcaagggatgttattattgcatttgatttaatggaaaggagacttttagag 48147517  T
Q  232 atgccttttctagat 246  Q
    |||||||||| ||||    
T  48147516 atgccttttccagat 48147502  T

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Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 46 - 231
Target Start/End: Original strand, 48852756 - 48852944
Alignment:
Q  46 tttttctcattaagagataatacctggaaagtactagagggtactcgcttcccttatatgaatgactatgatgatcccagagtagggtcactttttaacg 145  Q
    ||||||||||| |||| |||| | ||||||| | | |||||||||| ||||||||| ||||||| ||  |||||||||||||||||||| |||||||| |    
T  48852756 tttttctcattgagagctaatgcatggaaagaaattgagggtactcacttcccttacatgaatgcctccgatgatcccagagtagggtcgctttttaatg 48852855  T
Q  146 gggttattcattggttagcttatcatcatgattt---agtgaagaatgctattcttgcatttgatttaacggaaaggaaacttttagag 231  Q
    ||| |||||||||||| |||| || |||||||||   | |||| |||| |||| | || |||||||||| |||||||||||||||||||    
T  48852856 gggctattcattggttggcttttcgtcatgatttaccaatgaataatgttattgtggcctttgatttaatggaaaggaaacttttagag 48852944  T

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Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 39 - 239
Target Start/End: Complemental strand, 45372067 - 45371864
Alignment:
Q  39 tttggaatttttctcattaagagataatacctggaaagtactagagggtactcgcttcccttatatgaatgactatga---tgatcccagagtagggtca 135  Q
    |||||| ||||||||||| ||||||||||| |||| || ||| |||||||||| |||||||||| |||| |   ||||   ||| || |||| ||||||     
T  45372067 tttggagtttttctcattgagagataatacttggagagaacttgagggtactcacttcccttatttgaacgctaatgaatttgaacctagaggagggtcc 45371968  T
Q  136 ctttttaacggggttattcattggttagcttatcatcatgatttagtgaagaatgctattcttgcatttgatttaacggaaaggaaacttttagagatgc 235  Q
     |  |||| |||| |||| |||||||  ||| || ||||||||||  || || || ||||||||| |||||||||| |||| |||||||||||||||||     
T  45371967 ttccttaatggggctatttattggttgtcttttcgtcatgatttatcgatgagtgttattcttgcctttgatttaatggaacggaaacttttagagatgt 45371868  T
Q  236 cttt 239  Q
    ||||    
T  45371867 cttt 45371864  T

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Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 39 - 230
Target Start/End: Complemental strand, 49044185 - 49043994
Alignment:
Q  39 tttggaatttttctcattaagagataatacctggaaagtactagagggtactcgcttcccttatatgaatgactatgatgatcccagagtagggtcactt 138  Q
    |||||| ||||||||||| ||||||||||  ||||| | | | |||| ||||  |||||||||||| ||   || |||| || |||  |||||||| ||     
T  49044185 tttggagtttttctcattgagagataatagatggaatgaaattgaggttactaacttcccttatataaacttctctgattattccatggtagggtcgctc 49044086  T
Q  139 tttaacggggttattcattggttagcttatcatcatgatttagtgaagaatgctattcttgcatttgatttaacggaaaggaaacttttaga 230  Q
    ||||| |||| |||||| ||||| |||| ||||| |||||||   | ||||| |||| |||| ||||||||||  |||||||||||||||||    
T  49044085 tttaatggggctattcactggttggcttttcatcttgatttatcaatgaatgttattgttgcctttgatttaattgaaaggaaacttttaga 49043994  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 218
Target Start/End: Complemental strand, 49048571 - 49048392
Alignment:
Q  39 tttggaatttttctcattaagagataatacctggaaagtactagagggtactcgcttcccttatatgaatgactatgatgatcccagagtagggtcactt 138  Q
    |||||| |||||||| || ||||||||||  ||||||| | | |||||||||| | |||||||||||||   || |||| || |||   | || || ||     
T  49048571 tttggagtttttctcgttgagagataatatatggaaagaaattgagggtactcacatcccttatatgaacttctctgattattccatgattggatcgctc 49048472  T
Q  139 tttaacggggttattcattggttagcttatcatcatgatttagtgaagaatgctattcttgcatttgatttaacggaaag 218  Q
     ||||| ||| |||||| ||||| |||| ||||| |||||||  || ||||| |||| |||| |||||||||||||||||    
T  49048471 cttaacagggctattcactggttggcttttcatcttgatttatcgatgaatgttattgttgcctttgatttaacggaaag 49048392  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 145 - 227
Target Start/End: Complemental strand, 48705272 - 48705190
Alignment:
Q  145 ggggttattcattggttagcttatcatcatgatttagtgaagaatgctattcttgcatttgatttaacggaaaggaaactttt 227  Q
    |||| |||||||||||| ||||||| ||||||||||   ||| ||| |||| |||| |||||||||| ||||||| |||||||    
T  48705272 ggggctattcattggttggcttatcgtcatgatttacgaaaggatgttattgttgcctttgatttaatggaaagggaactttt 48705190  T

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Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 145 - 227
Target Start/End: Original strand, 48870722 - 48870804
Alignment:
Q  145 ggggttattcattggttagcttatcatcatgatttagtgaagaatgctattcttgcatttgatttaacggaaaggaaactttt 227  Q
    |||| |||||||||||| ||||||| |  || |||||  ||||||| ||| ||||| |||||||||||||||||| |||||||    
T  48870722 ggggctattcattggttggcttatcgtgctggtttaggaaagaatgttatccttgcctttgatttaacggaaaggcaactttt 48870804  T

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Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 145 - 227
Target Start/End: Original strand, 48886408 - 48886490
Alignment:
Q  145 ggggttattcattggttagcttatcatcatgatttagtgaagaatgctattcttgcatttgatttaacggaaaggaaactttt 227  Q
    |||| |||||||||||| ||||||| |  || |||||  ||||||| ||| ||||| |||||||||||||||||| |||||||    
T  48886408 ggggctattcattggttggcttatcgtgctggtttaggaaagaatgttatccttgcctttgatttaacggaaaggcaactttt 48886490  T

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Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 48156267 - 48156223
Alignment:
Q  197 ttgcatttgatttaacggaaaggaaacttttagagatgccttttc 241  Q
    ||||||||||||||| |||  ||||||||||||||||||||||||    
T  48156267 ttgcatttgatttaatggatcggaaacttttagagatgccttttc 48156223  T

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Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 227
Target Start/End: Original strand, 48876024 - 48876108
Alignment:
Q  143 acggggttattcattggttagcttatcatcatgatttagtgaagaatgctattcttgcatttgatttaacggaaaggaaactttt 227  Q
    |||||| |||||||||||| ||||||| | ||||||||   ||||||| ||| ||||| |||||||| || |||||| |||||||    
T  48876024 acggggctattcattggttggcttatcgtgatgatttacaaaagaatgttatccttgcctttgatttcactgaaaggcaactttt 48876108  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 241
Target Start/End: Original strand, 47208126 - 47208175
Alignment:
Q  192 tattcttgcatttgatttaacggaaaggaaacttttagagatgccttttc 241  Q
    ||||||||||||||||||||  ||||| |||||||||  |||||||||||    
T  47208126 tattcttgcatttgatttaattgaaagaaaacttttaatgatgccttttc 47208175  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 234
Target Start/End: Original strand, 48898963 - 48899000
Alignment:
Q  197 ttgcatttgatttaacggaaaggaaacttttagagatg 234  Q
    |||| ||||||||||||||||||||||| |||||||||    
T  48898963 ttgcctttgatttaacggaaaggaaactgttagagatg 48899000  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 48903123 - 48903195
Alignment:
Q  139 tttaacggggttattcattggttagcttatcatcatgatttagtgaagaatgctattcttgcatttgatttaa 211  Q
    ||||| |||| |||||||| ||| |||| |||||||||||||   ||||||| |||| |||| ||||||||||    
T  48903123 tttaatggggctattcattagttggcttttcatcatgatttaagaaagaatgttattgttgcctttgatttaa 48903195  T

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Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 94 - 228
Target Start/End: Complemental strand, 4031844 - 4031710
Alignment:
Q  94 ttcccttatatgaatgactatgatgatcccagagtagggtcactttttaacggggttattcattggttagcttatcatcatgatttagtgaagaatgcta 193  Q
    ||||||||||| |||| || | ||||||||||||||||||| |||||||  ||   |||||||||||| |||| || ||||||||||  ||  |||| ||    
T  4031844 ttcccttatataaatgcctctcatgatcccagagtagggtcgctttttagtggatctattcattggttggcttttcgtcatgatttatcgataaatgtta 4031745  T
Q  194 ttcttgcatttgatttaacggaaaggaaactttta 228  Q
    |  |||| ||||||||||||||||| |||||||||    
T  4031744 tcgttgcctttgatttaacggaaagaaaactttta 4031710  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 180
Target Start/End: Original strand, 21015899 - 21016033
Alignment:
Q  46 tttttctcattaagagataatacctggaaagtactagagggtactcgcttcccttatatgaatgactatgatgatcccagagtagggtcactttttaacg 145  Q
    |||||||| || ||||||||||  ||||||| | | |||||||||| ||||||||| ||||||  || |||| || |||  ||||||||  ||||||| |    
T  21015899 tttttctcgttgagagataataggtggaaagaaattgagggtactcccttcccttacatgaatacctctgattattccatggtagggtcggtttttaatg 21015998  T
Q  146 gggttattcattggttagcttatcatcatgattta 180  Q
    ||| |||||||||||| |||| || ||||||||||    
T  21015999 gggctattcattggttggcttttcgtcatgattta 21016033  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 230
Target Start/End: Complemental strand, 47451850 - 47451705
Alignment:
Q  85 ggtactcgcttcccttatatgaatgactatgatgatcccagagtagggtcactttttaacggggttattcattggttagcttatcatcatgatttagtga 184  Q
    ||||||| ||||||||||||||||   | ||||||||| ||||||||||  || || || |||| |||| ||||||| |||| || ||||||| ||   |    
T  47451850 ggtactcacttcccttatatgaattcatgtgatgatcctagagtagggtggctcttcaatggggctatttattggttggcttttcgtcatgatatatcca 47451751  T
Q  185 agaatgctattcttgcatttgatttaacggaaaggaaacttttaga 230  Q
     ||||| ||||  |||||||||||||| |||||| ||| |||||||    
T  47451750 tgaatgttattgctgcatttgatttaatggaaagaaaatttttaga 47451705  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 241
Target Start/End: Complemental strand, 11005858 - 11005716
Alignment:
Q  99 ttatatgaatgactatgatgatcccagagtagggtcactttttaacggggttattcattggttagcttatcatcatgatttagtgaa-gaatgctattct 197  Q
    |||||||||||   ||||||||||||  |||||| | |||||||| |||  ||||||||||||  ||| ||  |||||||| || || | ||| |||| |    
T  11005858 ttatatgaatgcaaatgatgatcccaaggtagggacgctttttaatgggactattcattggttctcttttcgccatgattt-gtcaatggatgttattgt 11005760  T
Q  198 tgcatttgatttaacggaaaggaaacttttagagatgccttttc 241  Q
    ||  |||||||||  |||||||||||||||||||||||||||||    
T  11005759 tggctttgatttagtggaaaggaaacttttagagatgccttttc 11005716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 239
Target Start/End: Original strand, 29688300 - 29688394
Alignment:
Q  145 ggggttattcattggttagcttatcatcatgatttagtgaagaatgctattcttgcatttgatttaacggaaaggaaacttttagagatgccttt 239  Q
    ||||||||||| ||||| |||| |||| |||||  |   | ||||| |||| ||| |||| |||||||||||||||||||| ||||| |||||||    
T  29688300 ggggttattcactggttggcttttcattatgatagatcaatgaatgttattgttggatttcatttaacggaaaggaaacttatagagttgccttt 29688394  T

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