View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19227_low_3 (Length: 494)
Name: NF19227_low_3
Description: NF19227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19227_low_3 |
 | |
|
| [»] scaffold0082 (2 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 467; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 4 - 482
Target Start/End: Complemental strand, 38608637 - 38608159
Alignment:
| Q |
4 |
gaacgtgagcactggaacggtgatcaggatgaaacggcaaggagagtgaagtcattctctcaacgtcacaagaaaacggagacagtgtagagacgaaacc |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
38608637 |
gaacgtgagcactggaacggtgatcaggatgaaacggaaaggagagtgaagtcattctctcaacgtcacaagaaaacggagaaagtgtagagacgaaacc |
38608538 |
T |
|
| Q |
104 |
ttgaaggccgtgaacaacaaccattccgttgttgaatagatccggttgagcaatctcaacgcctccgatgaaaacttttggagcaccgccggtagtaatg |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38608537 |
ttgaaggccgtgaacaacaaccattccgttgttgaatagatccggttgagcaatctcaacgcctccgatgaaaacttttggagcaccgccggtagtaatg |
38608438 |
T |
|
| Q |
204 |
ttcgaatgaatcgaatcggaagtgacggttatgcaacggcctggactgagcgtctcgatcttggtgccaaaaggaagcgtacgcaaatactcgatagtga |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38608437 |
ttcgaatgaatcgaatcggaagtgacggttatgcaacggcctggactgagcgtctcgatcttggtgccaaaaggaagcgtacgcaaatactcgatagtga |
38608338 |
T |
|
| Q |
304 |
ataaacctggaacgatgtgttcacggaggagattcggaacagagcaagaaaagcaagtgcgaagcgaagcatcggagggagcgaaaatggtagaaggacc |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38608337 |
ataaacctggaacgatgtgttcacggaggagattcggaacagagcaagaaaagcaagtgcgaagcgaagcatcggagggagcgaaaatggtagaaggacc |
38608238 |
T |
|
| Q |
404 |
ggtccaagcagaggaagcggtggttgcggcatcggagagcgacggagcggcggttgcaagctcgtgaaatccgtgatga |
482 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
38608237 |
ggtccaagcagaggaagcggtggttgcggcatcggagagcgacggagcggcggttgcaagctcgtgaaatccgagatga |
38608159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 4 - 482
Target Start/End: Complemental strand, 38793420 - 38792942
Alignment:
| Q |
4 |
gaacgtgagcactggaacggtgatcaggatgaaacggcaaggagagtgaagtcattctctcaacgtcacaagaaaacggagacagtgtagagacgaaacc |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
38793420 |
gaacgtgagcactggaacggtgatcaggatgaaacggaaaggagagtgaagtcattctctcaacgtcacaagaaaacggagaaagtgtagagacgaaacc |
38793321 |
T |
|
| Q |
104 |
ttgaaggccgtgaacaacaaccattccgttgttgaatagatccggttgagcaatctcaacgcctccgatgaaaacttttggagcaccgccggtagtaatg |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38793320 |
ttgaaggccgtgaacaacaaccattccgttgttgaatagatccggttgagcaatctcaacgcctccgatgaaaacttttggagcaccgccggtagtaatg |
38793221 |
T |
|
| Q |
204 |
ttcgaatgaatcgaatcggaagtgacggttatgcaacggcctggactgagcgtctcgatcttggtgccaaaaggaagcgtacgcaaatactcgatagtga |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38793220 |
ttcgaatgaatcgaatcggaagtgacggttatgcaacggcctggactgagcgtctcgatcttggtgccaaaaggaagcgtacgcaaatactcgatagtga |
38793121 |
T |
|
| Q |
304 |
ataaacctggaacgatgtgttcacggaggagattcggaacagagcaagaaaagcaagtgcgaagcgaagcatcggagggagcgaaaatggtagaaggacc |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38793120 |
ataaacctggaacgatgtgttcacggaggagattcggaacagagcaagaaaagcaagtgcgaagcgaagcatcggagggagcgaaaatggtagaaggacc |
38793021 |
T |
|
| Q |
404 |
ggtccaagcagaggaagcggtggttgcggcatcggagagcgacggagcggcggttgcaagctcgtgaaatccgtgatga |
482 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
38793020 |
ggtccaagcagaggaagcggtggttgcggcatcggagagcgacggagcggcggttgcaagctcgtgaaatccgagatga |
38792942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 4 - 482
Target Start/End: Original strand, 38121486 - 38121964
Alignment:
| Q |
4 |
gaacgtgagcactggaacggtgatcaggatgaaacggcaaggagagtgaagtcattctctcaacgtcacaagaaaacggagacagtgtagagacgaaacc |
103 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||||| |||||||| ||| |||||||||||||||| |||||||||||||| || ||||| ||||||| |
|
|
| T |
38121486 |
gaacatgagcaccggaacggtgatcaggatgaaacggaaaggagagagaactcattctctcaacgtcgcaagaaaacggagaaagcttagaggcgaaacc |
38121585 |
T |
|
| Q |
104 |
ttgaaggccgtgaacaacaaccattccgttgttgaatagatccggttgagcaatctcaacgcctccgatgaaaacttttggagcaccgccggtagtaatg |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||| ||| || |
|
|
| T |
38121586 |
ttgaaggccgtgaacaacaaccattccgttgttgaatagatccggttgagtaatctcaacgcctccgatgaagacttttggagcactgccggaagtgttg |
38121685 |
T |
|
| Q |
204 |
ttcgaatgaatcgaatcggaagtgacggttatgcaacggcctggactgagcgtctcgatcttggtgccaaaaggaagcgtacgcaaatactcgatagtga |
303 |
Q |
| |
|
||| ||||||||| |||||||||||||||| ||||||||| |||||||| ||||| |||||||||||||||| ||| || | ||| ||||| |||| |
|
|
| T |
38121686 |
ttctgatgaatcgactcggaagtgacggttacgcaacggccgggactgagagtctcaatcttggtgccaaaagcaagtcgccgaagatattcgatggtga |
38121785 |
T |
|
| Q |
304 |
ataaacctggaacgatgtgttcacggaggagattcggaacagagcaagaaaagcaagtgcgaagcgaagcatcggagggagcgaaaatggtagaaggacc |
403 |
Q |
| |
|
||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||| |
|
|
| T |
38121786 |
atatacctggaactatgtgttcacgaaggagattcggaacagagcaagaaaagcaagtgcgaagcgatgcatcagagggagcgaaaatggtgaaaggacc |
38121885 |
T |
|
| Q |
404 |
ggtccaagcagaggaagcggtggttgcggcatcggagagcgacggagcggcggttgcaagctcgtgaaatccgtgatga |
482 |
Q |
| |
|
||||||||||| ||||| ||||||||| || |||||||||||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
38121886 |
ggtccaagcaggggaagtggtggttgcagcgtcggagagcgacggagcggcggttgcaagctcgtgaaaaccgagatga |
38121964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 4 - 482
Target Start/End: Original strand, 28731060 - 28731538
Alignment:
| Q |
4 |
gaacgtgagcactggaacggtgatcaggatgaaacggcaaggagagtgaagtcattctctcaacgtcacaagaaaacggagacagtgtagagacgaaacc |
103 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| || |||||| ||||||| |
|
|
| T |
28731060 |
gaacatgagcactggaacggtgatcaggatgaaacggaaaggagagtgaagtcattctctcaacgtcgcaagaaaacggagaaagcgtagaggcgaaacc |
28731159 |
T |
|
| Q |
104 |
ttgaaggccgtgaacaacaaccattccgttgttgaatagatccggttgagcaatctcaacgcctccgatgaaaacttttggagcaccgccggtagtaatg |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||| ||| || |
|
|
| T |
28731160 |
ttgaaggccgtgaacaacaaccattccgttgttgaatagatctggttgagtaatctcaacgcctccgatgaatacttttggagcaccgccggaagtgctg |
28731259 |
T |
|
| Q |
204 |
ttcgaatgaatcgaatcggaagtgacggttatgcaacggcctggactgagcgtctcgatcttggtgccaaaaggaagcgtacgcaaatactcgatagtga |
303 |
Q |
| |
|
|||| ||||||||| ||||||||||| |||| ||||||||| |||||||| |||||||||||||||||||||| ||| || | ||| ||||| |||| |
|
|
| T |
28731260 |
ttcggatgaatcgactcggaagtgacagttacgcaacggccgggactgagagtctcgatcttggtgccaaaagcaagacgccggagatattcgatggtga |
28731359 |
T |
|
| Q |
304 |
ataaacctggaacgatgtgttcacggaggagattcggaacagagcaagaaaagcaagtgcgaagcgaagcatcggagggagcgaaaatggtagaaggacc |
403 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||| ||||| ||||||||||||||||| ||||||| |
|
|
| T |
28731360 |
atatacctggaacgatgtgttcacggaggagattcggaacagagcaagaaaaacaagtgcggatcgatgcatcagagggagcgaaaatggtgaaaggacc |
28731459 |
T |
|
| Q |
404 |
ggtccaagcagaggaagcggtggttgcggcatcggagagcgacggagcggcggttgcaagctcgtgaaatccgtgatga |
482 |
Q |
| |
|
|||||||||| ||||| ||||||||| || || ||||||| |||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
28731460 |
ggtccaagcaagggaagtggtggttgcagcgtcagagagcgtaggagcggcggttgcaagctcgtgaaaaccgagatga |
28731538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 173; Significance: 8e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 202 - 482
Target Start/End: Original strand, 31529212 - 31529492
Alignment:
| Q |
202 |
tgttcgaatgaatcgaatcggaagtgacggttatgcaacggcctggactgagcgtctcgatcttggtgccaaaaggaagcgtacgcaaatactcgatagt |
301 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||| ||||||||| |||||||| ||||| |||||||||||||||| ||| || | ||| ||||| || |
|
|
| T |
31529212 |
tgttcggatgaatcgactcggaagtgacggttacgcaacggccgggactgagagtctcaatcttggtgccaaaagcaagtcgccggagatattcgatggt |
31529311 |
T |
|
| Q |
302 |
gaataaacctggaacgatgtgttcacggaggagattcggaacagagcaagaaaagcaagtgcgaagcgaagcatcggagggagcgaaaatggtagaagga |
401 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||| |
|
|
| T |
31529312 |
gaatatacctggaacgatgtgttcacggaggagattcggaacagagcaagaaaagcaagtgcgaagcgaagcatcagagggagcgaaaatagtgaaagga |
31529411 |
T |
|
| Q |
402 |
ccggtccaagcagaggaagcggtggttgcggcatcggagagcgacggagcggcggttgcaagctcgtgaaatccgtgatga |
482 |
Q |
| |
|
||||||||||||| ||||| ||||||||| || ||||||||||| |||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
31529412 |
ccggtccaagcaggggaagtggtggttgcagcgtcggagagcgatggagcggcggttgcaagctcgtgaaaaccgagatga |
31529492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 202 - 482
Target Start/End: Original strand, 51801280 - 51801560
Alignment:
| Q |
202 |
tgttcgaatgaatcgaatcggaagtgacggttatgcaacggcctggactgagcgtctcgatcttggtgccaaaaggaagcgtacgcaaatactcgatagt |
301 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||| ||||||||| |||||||| |||||||||||||||||||||| ||| || | || | ||| || |
|
|
| T |
51801280 |
tgttcggatgaatcgaatcggaagtgacgattacgcaacggccgggactgagagtctcgatcttggtgccaaaagcaagtcgccggaggtatttgatggt |
51801379 |
T |
|
| Q |
302 |
gaataaacctggaacgatgtgttcacggaggagattcggaacagagcaagaaaagcaagtgcgaagcgaagcatcggagggagcgaaaatggtagaagga |
401 |
Q |
| |
|
||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||| |||||||||||||| || ||||| |
|
|
| T |
51801380 |
gaatatatctggaacgatgtgttcacggaggagattcggaacacagcaagaaaagcaagtgtgaagcgaagtatcagagggagcgaaaatagtgaaagga |
51801479 |
T |
|
| Q |
402 |
ccggtccaagcagaggaagcggtggttgcggcatcggagagcgacggagcggcggttgcaagctcgtgaaatccgtgatga |
482 |
Q |
| |
|
||||||||||||| ||||| ||||||||| || |||||||||||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
51801480 |
ccggtccaagcaggggaagtggtggttgcagcgtcggagagcgacggagcggcggttgcaagctcgtgaaaaccgagatga |
51801560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 161; Significance: 1e-85; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 202 - 482
Target Start/End: Complemental strand, 34876008 - 34875728
Alignment:
| Q |
202 |
tgttcgaatgaatcgaatcggaagtgacggttatgcaacggcctggactgagcgtctcgatcttggtgccaaaaggaagcgtacgcaaatactcgatagt |
301 |
Q |
| |
|
|||||| ||||||||| |||||||||| ||||| ||||||||| |||||||| |||||||||||||||||||||| ||| || | ||| ||||| || |
|
|
| T |
34876008 |
tgttcggatgaatcgactcggaagtgatggttacgcaacggccgggactgagagtctcgatcttggtgccaaaagcaagtcgccggagatattcgatggt |
34875909 |
T |
|
| Q |
302 |
gaataaacctggaacgatgtgttcacggaggagattcggaacagagcaagaaaagcaagtgcgaagcgaagcatcggagggagcgaaaatggtagaagga |
401 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||| || ||||| |
|
|
| T |
34875908 |
gaatatacctggaacgatgtgttcacggaggagattcggaacagagcaagaaaagcaagtgtgaagcgaagcatcaaagggagcaaaaatagtgaaagga |
34875809 |
T |
|
| Q |
402 |
ccggtccaagcagaggaagcggtggttgcggcatcggagagcgacggagcggcggttgcaagctcgtgaaatccgtgatga |
482 |
Q |
| |
|
||||||||||||| ||||| ||||||||| || |||||||| ||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
34875808 |
ccggtccaagcaggggaagtggtggttgcagcgtcggagagtgacggagcggcggttgcaagctcgtgaaaaccgagatga |
34875728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0082 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: scaffold0082
Description:
Target: scaffold0082; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 24 - 151
Target Start/End: Original strand, 34038 - 34165
Alignment:
| Q |
24 |
tgatcaggatgaaacggcaaggagagtgaagtcattctctcaacgtcacaagaaaacggagacagtgtagagacgaaaccttgaaggccgtgaacaacaa |
123 |
Q |
| |
|
||||| ||||| ||||| || ||||| || ||||| ||||| ||||| ||| |||||||||| || | ||||| ||||||||||||||| |||| ||| | |
|
|
| T |
34038 |
tgatctggatggaacgggaacgagagcgaggtcatcctctccacgtcgcaataaaacggagagagcggagagatgaaaccttgaaggccatgaataacca |
34137 |
T |
|
| Q |
124 |
ccattccgttgttgaatagatccggttg |
151 |
Q |
| |
|
|||| ||||||||||| ||||| ||||| |
|
|
| T |
34138 |
ccatgccgttgttgaagagatcaggttg |
34165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0082; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 426
Target Start/End: Original strand, 34346 - 34428
Alignment:
| Q |
344 |
agagcaagaaaagcaagtgcgaagcgaagcatcggagggagcgaaaatggtagaaggaccggtccaagcagaggaagcggtgg |
426 |
Q |
| |
|
||||||||| ||||| |||| || || ||||| || |||||||| || ||||||||||||||||| ||||||| |||||||| |
|
|
| T |
34346 |
agagcaagagaagcaggtgcagagggaggcatctgatggagcgaagatcgtagaaggaccggtccaggcagaggcagcggtgg |
34428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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