View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19227_low_4 (Length: 489)
Name: NF19227_low_4
Description: NF19227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19227_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 134 - 471
Target Start/End: Complemental strand, 16902309 - 16901972
Alignment:
| Q |
134 |
ttgtacatgaatatttgtttaaactgagaataaagtgaaaggaaagaacatgccttgattgtctcgaaaagtagaaaatatttccagttccattaaccaa |
233 |
Q |
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| T |
16902309 |
ttgtacatgaatatttgttcaaactgagaataaagtgaaaggaaagaacatgccatgattgtctcgaaaagtagaaaatatttccagttccattaaccaa |
16902210 |
T |
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| Q |
234 |
attcactcttgttcgttgtttccacgaggagcatggaaacaaaagtatgtaaaaaattccacttactttgcaattttgatgtttgagcagagtgaagctg |
333 |
Q |
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| T |
16902209 |
attcactcttgtttgttgtttccacgaggagcatggaaacaaaagtatgtaaaaaattccacttactttgcaattttgatgtttgagcagagtgaagctg |
16902110 |
T |
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| Q |
334 |
attgtaaagataggaatggtctgaagttaggggggactaatagaaaaggttgtttgtttggaagaactgataaagatgtgatggatcaagagaaagatct |
433 |
Q |
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| T |
16902109 |
attgtaaagataggaatggtctgaagttaggggggactaatagaaaaggttgtttgtttggaagaactgataaagatgtgatggatcaagagaaagatct |
16902010 |
T |
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| Q |
434 |
gcgtagatggtctagtcagcattcggccgttgaggtct |
471 |
Q |
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| T |
16902009 |
gcgtagatggtctagtcagcattcggccgttgaggtct |
16901972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 16902449 - 16902384
Alignment:
| Q |
1 |
caaattgaaatattttctctatcgaacaggttctcaaggctttttgttttatgaaatggtttcacg |
66 |
Q |
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| T |
16902449 |
caaattgaaatattttctctatcgaacaagttctcaaggctttttgttttatgaaatggtttcacg |
16902384 |
T |
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