View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19227_low_5 (Length: 476)
Name: NF19227_low_5
Description: NF19227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19227_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 436
Target Start/End: Complemental strand, 30797334 - 30796899
Alignment:
| Q |
1 |
aaatcaatgttgtcatggttataagtaatatagaatcgtaacatacaattgaaataatgcataatagataatcaaggtgtaaacattgagattcactcac |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30797334 |
aaatcaatgttgtcatggttataaataatatagaatcgtaacatacaattgaaataatgcataatagataatcaaggtgtaaacattgagattcactcac |
30797235 |
T |
|
| Q |
101 |
aaaatgaaatgttacaaagaaacaaggggtaattattaccttataatatgttagatcattcttcgtgaattatcgaatttgaatcaaatcggcaaaatac |
200 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
30797234 |
aaaatgaaaagttacaaagaaacaaggggtaattattaccttataatatgctagatcattcttcgtgaattatcgaaattcaatcaaatcggcaaaatac |
30797135 |
T |
|
| Q |
201 |
caaataatatgaagagaaaaatatgatttctatatcatttggtacttcgtcgactgatcaaaattcgtccttcaatttcatatgtatgccaagttacaca |
300 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
30797134 |
taaataatatgaagagaaaaatatgatttgtatatcatttgatacttcgtcgactgatcaaaattcgtccttcaatttcatatgaatgccaagttacaca |
30797035 |
T |
|
| Q |
301 |
tatccaacattgaaccacatatgagaaaagcatatgtgagcacccatcactctcactcttcttaagtcctcctttcaacatttctatacagtatacggtg |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
30797034 |
tatccaacattgaaccacatatgagaaaagcatatgtgagcacccatcactctcagtcttcttaagtcctcctttcaacatttctatacagtatacagtg |
30796935 |
T |
|
| Q |
401 |
tatatataggcaaaaagatacaaatgggtatccgaa |
436 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
30796934 |
tatatataggcaaaaagatacaaatgggtatccgaa |
30796899 |
T |
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