View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19228_high_4 (Length: 434)
Name: NF19228_high_4
Description: NF19228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19228_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 54 - 417
Target Start/End: Complemental strand, 53066365 - 53066002
Alignment:
| Q |
54 |
agagaaacttatatactaacatgttcctggttttattgttgttatttttgtatttgtggttggaatttatttaaaggaacgttaccagcagcctagcccc |
153 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53066365 |
agagaaacttatatactaacatgttcctggttttattgttgttatttttgtatttgtggttggaatttatttaaaggaacgttaccagcagcctagcccc |
53066266 |
T |
|
| Q |
154 |
agtgagcacctcacaagcgacgccgccacaaatgggtaattcaacctaatcctattttcataaaatcattcttttggtgtttgattcgatgaatctcaaa |
253 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
53066265 |
agtgagcacctcacaagcgacgccgccacaaatgggtaattcaacctaatcctattttcataaaattattcttttgctgtttgattcgatgaatctcaaa |
53066166 |
T |
|
| Q |
254 |
taacaacctcaccctttggtttcttatttcatcaatacagtagaaagaaaacttcttcatgggaagaagcggaaggagcaaaaagtagaaagcacaaagg |
353 |
Q |
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|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53066165 |
taacaacctcaccctttggtttcttatttcatcaatacaatagaaagaaaacttcttcatgggaagaagcggaaggagcaaaaagtagaaagcacaaagg |
53066066 |
T |
|
| Q |
354 |
aggatcttctccatgggaagaagccaaaggagcaaaaagtagaaagtactgatggagagcttct |
417 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53066065 |
aggatcttctccatgggaagaagccaaaggagcaaaaagtagaaagtactgatggagagcttct |
53066002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 182 - 411
Target Start/End: Original strand, 53331081 - 53331313
Alignment:
| Q |
182 |
caaatgggtaattcaacctaatcctattttcataaaatcattcttttggtgtttgattcgatgaatctcaaataacaacctcaccctttggtttcttat- |
280 |
Q |
| |
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|||||||||||||||||||||||||||||||||| || ||| ||||| ||||||||| |||||||||||||||| ||| ||||||||||| ||||||| |
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| T |
53331081 |
caaatgggtaattcaacctaatcctattttcatacaagtattattttgctgtttgatttgatgaatctcaaataataacttcaccctttggattcttatt |
53331180 |
T |
|
| Q |
281 |
--ttcatcaatacagtagaaagaaaacttcttcatgggaagaagcggaaggagcaaaaagtagaaagcacaaaggaggatcttctccatgggaagaagcc |
378 |
Q |
| |
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|||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53331181 |
atttcatcaatacaatagaaagaaaacttcttcatgagaagaagcggaaggagcaagaagtagaaagcacaaaggaggatcttctccatgggaagaagcc |
53331280 |
T |
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| Q |
379 |
aaaggagcaaaaagtagaaagtactgatggaga |
411 |
Q |
| |
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|||||||||||||||||||||||| || ||||| |
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| T |
53331281 |
aaaggagcaaaaagtagaaagtaccgagggaga |
53331313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 182 - 411
Target Start/End: Original strand, 53334765 - 53334997
Alignment:
| Q |
182 |
caaatgggtaattcaacctaatcctattttcataaaatcattcttttggtgtttgattcgatgaatctcaaataacaacctcaccctttggtttcttat- |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || ||| ||||| ||||||||| |||||||||||||||| ||| ||||||||||| ||||||| |
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|
| T |
53334765 |
caaatgggtaattcaacctaatcctattttcatacaagtattattttgctgtttgatttgatgaatctcaaataataacttcaccctttggattcttatt |
53334864 |
T |
|
| Q |
281 |
--ttcatcaatacagtagaaagaaaacttcttcatgggaagaagcggaaggagcaaaaagtagaaagcacaaaggaggatcttctccatgggaagaagcc |
378 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53334865 |
atttcatcaatacaatagaaagaaaacttcttcatgagaagaagcggaaggagcaagaagtagaaagcacaaaggaggatcttctccatgggaagaagcc |
53334964 |
T |
|
| Q |
379 |
aaaggagcaaaaagtagaaagtactgatggaga |
411 |
Q |
| |
|
|||||||||||||||||||||||| || ||||| |
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|
| T |
53334965 |
aaaggagcaaaaagtagaaagtaccgagggaga |
53334997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 182 - 411
Target Start/End: Original strand, 53338442 - 53338674
Alignment:
| Q |
182 |
caaatgggtaattcaacctaatcctattttcataaaatcattcttttggtgtttgattcgatgaatctcaaataacaacctcaccctttggtttcttat- |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || ||| ||||| ||||||||| |||||||||||||||| ||| ||||||||||| ||||||| |
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|
| T |
53338442 |
caaatgggtaattcaacctaatcctattttcatacaagtattattttgctgtttgatttgatgaatctcaaataataacttcaccctttggattcttatt |
53338541 |
T |
|
| Q |
281 |
--ttcatcaatacagtagaaagaaaacttcttcatgggaagaagcggaaggagcaaaaagtagaaagcacaaaggaggatcttctccatgggaagaagcc |
378 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53338542 |
atttcatcaatacaatagaaagaaaacttcttcatgagaagaagcggaaggagcaagaagtagaaagcacaaaggaggatcttctccatgggaagaagcc |
53338641 |
T |
|
| Q |
379 |
aaaggagcaaaaagtagaaagtactgatggaga |
411 |
Q |
| |
|
|||||||||||||||||||||||| || ||||| |
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|
| T |
53338642 |
aaaggagcaaaaagtagaaagtaccgagggaga |
53338674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 112 - 345
Target Start/End: Original strand, 53363243 - 53363487
Alignment:
| Q |
112 |
gttggaatttatttaaaggaacgttaccagcagcctag-----ccccagtgagcacctcacaagcgacgccgccac---aaatgggtaattcaacctaat |
203 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| ||||| || || | |||| | || ||| ||||| ||||||||||||||||||||| |
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| T |
53363243 |
gttggaatttattcaaaggaacgttaccagcagcctagactctccccaatgggcccttcacgatcgccgctgccaccgcaaatgggtaattcaacctaat |
53363342 |
T |
|
| Q |
204 |
cctattttcataaaatcattcttttggtgtttgattcgatgaatctcaaataacaacctcaccctttggtttc---ttatttcatcaatacagtagaaag |
300 |
Q |
| |
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|||||||||||| || ||||||||| ||||||||| |||||||||||||||| ||| |||||||| || ||| |||||||||||||||| |||||| |
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| T |
53363343 |
cctattttcatacaagtattcttttgctgtttgatttgatgaatctcaaataataacttcacccttcggattcttattatttcatcaatacaatagaaaa |
53363442 |
T |
|
| Q |
301 |
aaaacttcttcatgggaagaagcggaaggagcaaaaagtagaaag |
345 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
53363443 |
aaaacttcttcttgggaagaagcggaaggagcaaaaagtagaaag |
53363487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 112 - 345
Target Start/End: Complemental strand, 53073216 - 53072988
Alignment:
| Q |
112 |
gttggaatttatttaaaggaacgttaccagcagcctag-----ccccagtgagcacctcacaagcgacgccgccacaaatgggtaattcaacctaatcct |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||| ||||||||||||| |
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|
| T |
53073216 |
gttggaatttatttaaaggaacgttaccagcagcctagactctccccaatgagcacctcat------------cacaaatgggtaactcaacctaatcct |
53073129 |
T |
|
| Q |
207 |
attttcataaaatcattcttttggtgtttgattcgatgaatctcaaataacaacctcaccctttg--gtttcttatttcatcaatacagtagaaagaaaa |
304 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||| |||| ||||||||||| |||||| ||||||| ||||||||||||||||||||| || |||||||| |
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|
| T |
53073128 |
attttcataaaactattcttttgctgtttgatttgatgtatctcaaataataacctcgccctttggtgtttcttatttcatcaatacaataaaaagaaaa |
53073029 |
T |
|
| Q |
305 |
cttcttcatgggaagaagcggaaggagcaaaaagtagaaag |
345 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||| |
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|
| T |
53073028 |
cttctccatgggaagaagccaaaggagcaaaaagtagaaag |
53072988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 359 - 414
Target Start/End: Complemental strand, 53073028 - 53072973
Alignment:
| Q |
359 |
cttctccatgggaagaagccaaaggagcaaaaagtagaaagtactgatggagagct |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
53073028 |
cttctccatgggaagaagccaaaggagcaaaaagtagaaagtactgagggagagct |
53072973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 111
Target Start/End: Original strand, 53362634 - 53362692
Alignment:
| Q |
54 |
agagaaacttatatacta-acatgttcctggttttattgttgttatttttgtatttgtg |
111 |
Q |
| |
|
|||||||||||||||||| | |||||||| |||||||||| |||||||| |||||||| |
|
|
| T |
53362634 |
agagaaacttatatactacatatgttcctcattttattgttattatttttatatttgtg |
53362692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 148
Target Start/End: Original strand, 53362724 - 53362760
Alignment:
| Q |
112 |
gttggaatttatttaaaggaacgttaccagcagccta |
148 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||| |
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|
| T |
53362724 |
gttggaatttattcaatggaacgttaccagcagccta |
53362760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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