View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19228_high_5 (Length: 399)
Name: NF19228_high_5
Description: NF19228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19228_high_5 |
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| [»] scaffold0295 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 2 - 392
Target Start/End: Complemental strand, 55909415 - 55909025
Alignment:
| Q |
2 |
caaattacattataatgcatagtgataagtaaatacacatttgtaagttgacatttaaagaaaagtaatttctcttagaagtaaatcttaaaacactgac |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55909415 |
caaattacattataatgcatagtgataagtaaatacacatttgtaagttgacatttaaagaaaagtaatttctcttagaagtaaatcttaaaacactgac |
55909316 |
T |
|
| Q |
102 |
ataatgtggcacaagtggtagatatttgggtctctaactatttgctccaaagtttgatcatttgctggtgcatatggaaaaacatgtatttgtagaggtt |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55909315 |
ataatgtggcacaagtggtagatatttgggtctctaactatttgctccaaagtttgatcatttgctggtgcatatggaaaaacatgtatttgtagaggtt |
55909216 |
T |
|
| Q |
202 |
agcctcttaaatggatctcaattacctcgagggattagtcttcatagttgcacgtagaggataacttttcgtttaccaagnnnnnnnnnnnnnnnnnnnn |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55909215 |
agcctcttaaatggatctcaattacctcgagggattagtcttcatagttgcacgtagaggataacttttcgtttaccaagaaaaaaatctgaaaacaaaa |
55909116 |
T |
|
| Q |
302 |
ntatcttacaaattagagttcaaactttagcaggatacattcaaaatgttggaaaacaagacatccttgacgctacaagagtttcatctct |
392 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
55909115 |
atatcttacaagttagagttcaaactttagcaggatacattcaaaatgttggaaaacaagacatccttgacgctacaagagtttcctctct |
55909025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 96
Target Start/End: Complemental strand, 1489826 - 1489754
Alignment:
| Q |
25 |
gataagtaaatacacatttgtaagttgacatttaaaga-aaagtaatttctcttagaagtaaatcttaaaaca |
96 |
Q |
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||||||||||||||||||| ||||||||||||||| | | || ||| |||| ||||||||||| | |||||| |
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| T |
1489826 |
gataagtaaatacacattttcaagttgacatttaaaaacagagcaatatctcatagaagtaaatttaaaaaca |
1489754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 96
Target Start/End: Complemental strand, 1513869 - 1513797
Alignment:
| Q |
25 |
gataagtaaatacacatttgtaagttgacatttaaaga-aaagtaatttctcttagaagtaaatcttaaaaca |
96 |
Q |
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||||||||||||||||||| ||||||||||||||| | | || ||| |||| ||||||||||| | |||||| |
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| T |
1513869 |
gataagtaaatacacattttcaagttgacatttaaaaacagagcaatatctcatagaagtaaatttaaaaaca |
1513797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 2 - 394
Target Start/End: Complemental strand, 1038352 - 1037961
Alignment:
| Q |
2 |
caaattacattataatgcatagtgataagtaaatacacatttgtaagttgacatttaaagaaaagtaatttctcttagaagtaaatcttaaaacactgac |
101 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
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| T |
1038352 |
caaattacattataatgcatagtgatgagtaaatacacatttgtaagttgacatttaaagtaaagtaatttctcttagaaataaatcttaaaacactgac |
1038253 |
T |
|
| Q |
102 |
ataatgtggcacaagtggtagatatttgggtctctaactatttgctccaaagtttgatcatttgctggtgcatatggaaaaacatgtatttgtagaggtt |
201 |
Q |
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||||| ||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1038252 |
ataatctggcataagtggtagatatttgggtctctaactatttg-ttttaagtttgatcatttgctggtgcatatggaaaaacatgtatttgtagaggtt |
1038154 |
T |
|
| Q |
202 |
agcctcttaaatggatctcaattacctcgagggattagtcttcatagttgcacgtagaggataacttttcgtttaccaagnnnnnnnnnnnnnnnnnnnn |
301 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |
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| T |
1038153 |
agcctcttaaatggatcttaattacctcgagggattagtcttcatagttgcacgtagaggataacttttggtttactaaaaaaaaaatctaaaaacaaaa |
1038054 |
T |
|
| Q |
302 |
ntatcttacaaattagagttcaaactttagcaggatacattcaaaatgttggaaaacaagacatccttgacgctacaagagtttcatctctct |
394 |
Q |
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|
|||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1038053 |
atatcttacaagttagagttcaaactttagcatgatacattcaaaatgttggaaaacaagacatccttgacgctacaagagtttcatctctct |
1037961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 87
Target Start/End: Complemental strand, 44575968 - 44575905
Alignment:
| Q |
24 |
tgataagtaaatacacatttgtaagttgacatttaaagaaaagtaatttctcttagaagtaaat |
87 |
Q |
| |
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|||| |||||||| ||||||||||||| ||||||||| |||||||| |||| ||||||||||| |
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| T |
44575968 |
tgatgagtaaataaacatttgtaagtttacatttaaaacaaagtaatatctcatagaagtaaat |
44575905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0295 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0295
Description:
Target: scaffold0295; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 304 - 394
Target Start/End: Complemental strand, 1011 - 921
Alignment:
| Q |
304 |
atcttacaaattagagttcaaactttagcaggatacattcaaaatgttggaaaacaagacatccttgacgctacaagagtttcatctctct |
394 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||||| |||||||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
1011 |
atcttacaagttagagttcaaactttagcaggacacattcagaatgttgggaaacaagacatcctcaacgctacaagagtttcatctctct |
921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 10614380 - 10614442
Alignment:
| Q |
10 |
attataatgcatag--tgataagtaaatacacatttgtaagttgacatttaaagaaaagtaattt |
72 |
Q |
| |
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||||| |||||||| |||| ||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
10614380 |
attatcatgcatagactgatgagtaaatgcacatttgtaagttgacatttaa--aaaagtaattt |
10614442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 96
Target Start/End: Complemental strand, 10170403 - 10170332
Alignment:
| Q |
24 |
tgataagtaaatacacatttgtaagttgacatttaaagaaaagtaatttctcttagaagtaaatcttaaaaca |
96 |
Q |
| |
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|||| ||||||| |||||| |||||||||||||| || || | ||||||||| |||| |||||||||||||| |
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| T |
10170403 |
tgatgagtaaatgcacattcgtaagttgacattttaa-aatattaatttctcaaagaactaaatcttaaaaca |
10170332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 96
Target Start/End: Complemental strand, 10177928 - 10177857
Alignment:
| Q |
24 |
tgataagtaaatacacatttgtaagttgacatttaaagaaaagtaatttctcttagaagtaaatcttaaaaca |
96 |
Q |
| |
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|||| ||||||| |||||| |||||||||||||| || || | ||||||||| |||| |||||||||||||| |
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|
| T |
10177928 |
tgatgagtaaatgcacattcgtaagttgacattttaa-aatattaatttctcaaagaactaaatcttaaaaca |
10177857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 94
Target Start/End: Complemental strand, 51764768 - 51764699
Alignment:
| Q |
24 |
tgataagtaaatacacatttgtaagttgacatttaaagaaaagtaatttctcttagaagtaaatcttaaaa |
94 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||||| ||| | ||||||| |||| |||||||||||| |
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|
| T |
51764768 |
tgatgagtaaatgcacatttgtaagttgacatttaaa-aaatgcaatttcttaaagaattaaatcttaaaa |
51764699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 60
Target Start/End: Complemental strand, 515202 - 515174
Alignment:
| Q |
32 |
aaatacacatttgtaagttgacatttaaa |
60 |
Q |
| |
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||||||||||||||||||||||||||||| |
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|
| T |
515202 |
aaatacacatttgtaagttgacatttaaa |
515174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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