View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19228_high_6 (Length: 342)
Name: NF19228_high_6
Description: NF19228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19228_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 19 - 327
Target Start/End: Complemental strand, 280453 - 280140
Alignment:
| Q |
19 |
cataaaagttgatcttgtggtgaagtcttccatagtgg----aattaaggatgtggtttggtttgggaggatcaaatatgctctctcttaactacattgt |
114 |
Q |
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| T |
280453 |
cataaaagttgatcttgtggtgaagtcttccatagtgggattaattaaggatgtggtttggtttgggaggatcaaatatgctctctcttaactacattgt |
280354 |
T |
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| Q |
115 |
catataggttccaaacttgtaaattataccaccgattaatcaagaacaacaatcatatctaagaaatca-taaacatgacataaatgaatgtccacttca |
213 |
Q |
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| T |
280353 |
catataggttccaaacttgtaaattataccaccgattaatcaagaacaacaatcatatctaagaaatcactaaacatgacataaatggatgtccacttca |
280254 |
T |
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| Q |
214 |
ttaactgaaattacaatctctatgtatcccctaaatcatacctaagtttgatttttctgactaactttccaattaacatttgtccattggaagttcatga |
313 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
280253 |
ttaactgaaattacaatctctatgtatcccttaaatcatacctaagtttgatttttctgactaactttccaattaacatttgtccattggaagttcatga |
280154 |
T |
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| Q |
314 |
agccaccatctctg |
327 |
Q |
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|||||||||||||| |
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| T |
280153 |
agccaccatctctg |
280140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 127 - 254
Target Start/End: Complemental strand, 265924 - 265796
Alignment:
| Q |
127 |
aaacttgtaaattataccaccgattaatcaagaacaacaatcatatctaagaaatca-taaacatgacataaatgaatgtccacttcattaactgaaatt |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||| ||||||||||||||||||| |
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| T |
265924 |
aaacttgtaaattataccaccgattaatcaagaacaacaatcatgtctaagaaaacactaaacatgacataaatgaatgttcacttcattaactgaaatt |
265825 |
T |
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| Q |
226 |
acaatctctatgtatcccctaaatcatac |
254 |
Q |
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||||||||| |||| |||| |||| |||| |
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| T |
265824 |
acaatctctctgtaccccccaaattatac |
265796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 266570 - 266514
Alignment:
| Q |
20 |
ataaaagttgatcttgtggtgaagtcttccatagtggaattaaggatgtggtttggt |
76 |
Q |
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||||| ||||||||||||||||| ||||||||| | | |||||| |||||||||||| |
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| T |
266570 |
ataaacgttgatcttgtggtgaaatcttccataattggattaagaatgtggtttggt |
266514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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