View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19228_low_1 (Length: 606)
Name: NF19228_low_1
Description: NF19228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19228_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 163 - 595
Target Start/End: Complemental strand, 56160690 - 56160249
Alignment:
| Q |
163 |
agttacatggagttggaattagtttgacttgagggaaaacgtgtaggagataaacagtagttgtttctggtgtcacggcatgtttcaaggtccatgaaag |
262 |
Q |
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| T |
56160690 |
agttacatggagttggaattagtttgacttgagggaaaacgtgtaggagataaacagtagttgtttctggtgtcacggcatgtttcaaggtccatgaaag |
56160591 |
T |
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| Q |
263 |
tgcttccatgcttgaacttccaccattaatattaatatttgttcccactgccacataaacaacatcatctaaataattgtgtatatctatagagaacaca |
362 |
Q |
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| T |
56160590 |
tgcttccatgcttgaacttccaccattaatatt------tgttcccactgccacataaacaacatcatctaaataattgtgtatatctagagagaacaca |
56160497 |
T |
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| Q |
363 |
gtactgctctcacaccactcttcttctcttattgaatccaatctactttccttcttcatatttatctcaaacagctcttctgaatcaccatcatcgatg- |
461 |
Q |
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| T |
56160496 |
gtactgctctcacaccactcttcttctcttattgaatccaatctactttccttcttcatatttatctcaaacagctcttctgaatcaccatcatcgtcgt |
56160397 |
T |
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| Q |
462 |
-----ccgaaattgtaatcaaacacttggcttttcttgaacccaataaaaccacaaccacaactggagatttcatcatcgtagtagtgcaagcactc--- |
553 |
Q |
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| T |
56160396 |
cgtctccgaaattgtaatcaaatacttggcttttcttgaacccaataaaaccacaaccacaactggagatttcatcatcgtagtagtgcaagcactcaac |
56160297 |
T |
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| Q |
554 |
------attatcatgcttagttggcatcacatataatgttttgttcat |
595 |
Q |
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| T |
56160296 |
atctttaatatcatgcttagttggcatcacatataatgttttgttcat |
56160249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 556 - 591
Target Start/End: Complemental strand, 38933441 - 38933406
Alignment:
| Q |
556 |
tatcatgcttagttggcatcacatataatgttttgt |
591 |
Q |
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| T |
38933441 |
tatcatgcttagttggcatcacatataatgttttgt |
38933406 |
T |
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