View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19228_low_12 (Length: 270)
Name: NF19228_low_12
Description: NF19228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19228_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 42608105 - 42608361
Alignment:
| Q |
1 |
cattacgtgttctccatggttttctatgtttgtgttcacgtgtcttgtattccatcaaagatccttgaatgtgcggatgaaggggacgtgtggaaattct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42608105 |
cattacgtgttctccatggttttctatgtttgtgttcacgtgtcttgtattccatcaaagatccttgaatgtgcggatgaaggggacgtgtggaaattct |
42608204 |
T |
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| Q |
101 |
ttccaagaactacttctatacattttatctaatttgaaattgttcagattgatgttacaaaaaattatctatatagttaatgggagaaacgtgtaggtaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42608205 |
ttccaagaactacttctatacattttatctaatttgaaattgttcagattgatgttacaaaaaattatctatatagttaatgggagaaacgtgtaggtaa |
42608304 |
T |
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| Q |
201 |
aattatttcacgatcatgtagagagcttgcggatattcttgtgggcaatgaaataca |
257 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
42608305 |
aattatttcacgatcatgtcgagagcttgcggatattcttgtgggcaatgaaataca |
42608361 |
T |
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