View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19228_low_15 (Length: 230)
Name: NF19228_low_15
Description: NF19228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19228_low_15 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 10118728 - 10118499
Alignment:
| Q |
1 |
tggtttgaatatatatagcctatggtatgtaacatgtcaactccaaactctgcaaacagagacacggataactagttagtaatatcaagtgaaataatgg |
100 |
Q |
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| T |
10118728 |
tggtttgaatatatatagcctgtggtatgtaacatgtcaactccaaactctgcaaacagagacacggataactagttagtaatatcaagtgaaataatgg |
10118629 |
T |
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| Q |
101 |
tttgttaaaattccgctatgctacattgctatagctgctatctaactcacaatgtattaaatagtttatcacataaaaatagtgatttgttcaaattcta |
200 |
Q |
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| T |
10118628 |
tttgttaaaattccactatgctacattgctatagctgctatctaacccacaatgtattaaatagtttatcacataaaaatagtgatttgttcaaattcta |
10118529 |
T |
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| Q |
201 |
ctatgttatacagttatatccacttttaac |
230 |
Q |
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| T |
10118528 |
ctatgttatacagttatatccacttttaac |
10118499 |
T |
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Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 10125321 - 10125246
Alignment:
| Q |
5 |
ttgaatatatatagcctatggtatgtaacatgtcaactccaaactctgcaaacagagacacggataactagttagta |
81 |
Q |
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| T |
10125321 |
ttgagtatatatagccgatggtatgtaacatgtcaactccaaaggctgc-aacatagacacgggtaactagttagta |
10125246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 93 - 135
Target Start/End: Original strand, 50376278 - 50376320
Alignment:
| Q |
93 |
aataatggtttgttaaaattccgctatgctacattgctatagc |
135 |
Q |
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| T |
50376278 |
aataacggtttgttaaaattccgctatgctacagtgctatagc |
50376320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 211
Target Start/End: Original strand, 30580449 - 30580482
Alignment:
| Q |
178 |
aatagtgatttgttcaaattctactatgttatac |
211 |
Q |
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| T |
30580449 |
aatagtgatttgttcaaattctgctatgttatac |
30580482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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