View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19228_low_3 (Length: 451)
Name: NF19228_low_3
Description: NF19228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19228_low_3 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Original strand, 28736187 - 28736620
Alignment:
| Q |
1 |
accgtgtaaaaacctcaaaaactgatttgcaccgaaaataaccaaactgttttttcacacacaataccgaccaattctttttgatgcgatttggattaat |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
28736187 |
accgtgtaaaaacctcaaaaactgatttgcaccgaaaataaccaaactgttttttcacacacaataccgaccaattctttttggtgcgatttggattaat |
28736286 |
T |
|
| Q |
101 |
gattcaatacaannnnnnnnnnnnnnagcaacccgatttggagacaatttctaacctatcttgccaattaatagaatatattcaatattgatgaaagtga |
200 |
Q |
| |
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|||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
28736287 |
gattcaatacaatttttggtttttttagcagcccgatttggagacaatttcttacctatcttgccaattaataaaatatattcaatattgatgaaagtga |
28736386 |
T |
|
| Q |
201 |
cctaaaatttgaggccgtgtatattgataagacatatagagttaatggtatttcataactaatcgattgaacagcagctcgtagaccacacaaaaaggaa |
300 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
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| T |
28736387 |
cctaaaatttgaggccgtgtatatggataagacatatagagttaatggtatttcataactaatcgattgagcagcagctcgtagaccacacaaaaagaaa |
28736486 |
T |
|
| Q |
301 |
tttttattatttgacccatatcccgacataagaagtccaatgggagcaatacttaaaagataaacaagaactcacctgcatactactggcaaatcttcta |
400 |
Q |
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| ||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28736487 |
tatttattatttgacccatatcctgacataagaagtccaa-gggagcaatactcaaaagataaacaagaactcacctgcatactactggcaaatcttcta |
28736585 |
T |
|
| Q |
401 |
gtttgggggcattaagtgcaaagtcacatataaaa |
435 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
28736586 |
gtttgggggcattaagtgcaaagtcacatataaaa |
28736620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 360 - 435
Target Start/End: Original strand, 28713271 - 28713346
Alignment:
| Q |
360 |
ataaacaagaactcacctgcatactactggcaaatcttctagtttgggggcattaagtgcaaagtcacatataaaa |
435 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
28713271 |
ataaacaagaactcacctgcatactactggcaaatcttctagtttggaggcattaacagcaaagtcacatataaaa |
28713346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 5 - 195
Target Start/End: Original strand, 28713022 - 28713213
Alignment:
| Q |
5 |
tgtaaaaacctcaaaaactgatttgcaccgaaaataaccaaactgttttttcacacacaataccgaccaattctttttgatgcgatttggattaatgatt |
104 |
Q |
| |
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||||||||||||||||||||| ||||| ||||||||||||||||| |||||||| |||| ||||| || || |||||| ||||||||| | ||||||| |
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| T |
28713022 |
tgtaaaaacctcaaaaactgagttgcatcgaaaataaccaaactggtttttcacgaacaacaccgatcagttatttttggcgcgatttggttcaatgatt |
28713121 |
T |
|
| Q |
105 |
caatacaannnnnnnnnnnnnnagcaacccgatttggagacaatttctaacctatcttgccaattaata-gaatatattcaatattgatgaa |
195 |
Q |
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|| | ||| | |||| | |||||||||||||||||||||||| |||| |||||||| ||| ||||||||||||||||| |
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| T |
28713122 |
cagttcaatttttggtttttttaacaactcaatttggagacaatttctaacctattttgctaattaatacaaatgtattcaatattgatgaa |
28713213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 366 - 414
Target Start/End: Original strand, 28743177 - 28743225
Alignment:
| Q |
366 |
aagaactcacctgcatactactggcaaatcttctagtttgggggcatta |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| || |||||| |
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| T |
28743177 |
aagaactcacctgcatactactggcaaatcttctggttttggagcatta |
28743225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 113; Significance: 5e-57; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 221 - 353
Target Start/End: Complemental strand, 6929277 - 6929145
Alignment:
| Q |
221 |
atattgataagacatatagagttaatggtatttcataactaatcgattgaacagcagctcgtagaccacacaaaaaggaatttttattatttgacccata |
320 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||| |
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| T |
6929277 |
atattgataagacacatagagttaatggtatttcataactaatcgattgagcagcagctcgtagaccacccaaaaaggaatatttattatttgacccata |
6929178 |
T |
|
| Q |
321 |
tcccgacataagaagtccaatgggagcaatact |
353 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| |
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|
| T |
6929177 |
tcctgacataagaagtccaatgggagcaatact |
6929145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 113; Significance: 5e-57; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 221 - 353
Target Start/End: Complemental strand, 14541842 - 14541710
Alignment:
| Q |
221 |
atattgataagacatatagagttaatggtatttcataactaatcgattgaacagcagctcgtagaccacacaaaaaggaatttttattatttgacccata |
320 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||| |
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| T |
14541842 |
atattgataagacacatagagttaatggtatttcataactaatcgattgagcagcagctcgtagaccacccaaaaaggaatatttattatttgacccata |
14541743 |
T |
|
| Q |
321 |
tcccgacataagaagtccaatgggagcaatact |
353 |
Q |
| |
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||| ||||||||||||||||||||||||||||| |
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|
| T |
14541742 |
tcctgacataagaagtccaatgggagcaatact |
14541710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 113; Significance: 5e-57; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 221 - 353
Target Start/End: Complemental strand, 505345 - 505213
Alignment:
| Q |
221 |
atattgataagacatatagagttaatggtatttcataactaatcgattgaacagcagctcgtagaccacacaaaaaggaatttttattatttgacccata |
320 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||| |
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| T |
505345 |
atattgataagacacatagagttaatggtatttcataactaatcgattgagcagcagctcgtagaccacccaaaaaggaatatttattatttgacccata |
505246 |
T |
|
| Q |
321 |
tcccgacataagaagtccaatgggagcaatact |
353 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| |
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| T |
505245 |
tcctgacataagaagtccaatgggagcaatact |
505213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 274 - 353
Target Start/End: Complemental strand, 33925599 - 33925520
Alignment:
| Q |
274 |
gcagctcgtagaccacacaaaaaggaatttttattatttgacccatatcccgacataagaagtccaatgggagcaatact |
353 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||| |||| |||||||||| |
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|
| T |
33925599 |
gcagctcgtagaccacccaaaaaggaatatttattatttgacccatatcctgacataagaagtctaatgagagcaatact |
33925520 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 221 - 358
Target Start/End: Original strand, 53091521 - 53091658
Alignment:
| Q |
221 |
atattgataagacatatagagttaatggtatttcataactaatcgattgaacagcagctcgtagaccacacaaaaaggaatttttattatttgacccata |
320 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||| |||||||||||||||||| |
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| T |
53091521 |
atattgataagacacatagagttaatggtatttcataactaatcgattgagcagcatctcgtagaccacccaaaaaggaatatttattatttgacccata |
53091620 |
T |
|
| Q |
321 |
tcccgacataagaagtccaatgggagcaatacttaaaa |
358 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| |||| |
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|
| T |
53091621 |
tcctgacataagaagtccaatgggagcaatactcaaaa |
53091658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 221 - 354
Target Start/End: Complemental strand, 167000 - 166867
Alignment:
| Q |
221 |
atattgataagacatatagagttaatggtatttcataactaatcgattgaacagcagctcgtagaccacacaaaaaggaatttttattatttgacccata |
320 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||| | |||| |||| |||||||||||| | ||| |
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|
| T |
167000 |
atattgataagacacatagagttaatggtatttcataactaatggattgagcagcagctcgtagaccgcctgaaaaagaatatttattatttgagctata |
166901 |
T |
|
| Q |
321 |
tcccgacataagaagtccaatgggagcaatactt |
354 |
Q |
| |
|
||| | ||||||||| ||||| ||||| |||||| |
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|
| T |
166900 |
tcctgccataagaagaccaataggagctatactt |
166867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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