View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19228_low_7 (Length: 310)
Name: NF19228_low_7
Description: NF19228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19228_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 8 - 294
Target Start/End: Original strand, 45390051 - 45390337
Alignment:
| Q |
8 |
cagcacagagtgacagtaaataaattcatcttaaatgtcatttttccatcttgatgtcattttctgttgtctggctgattaattatacgaaatgtaatat |
107 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
45390051 |
cagcccagagtgacagtaaataaattcatcttaaatgtcatttttccatcttgatgtcattttctgttgtctggctgattaattatatgaaatgtaatat |
45390150 |
T |
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| Q |
108 |
tataaaccctcttcaggttcaaggagtgtcgtttggaaccgtaaatagggactaataaggtgaatgttttactcctctcaaacaaattataggtgaatgt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45390151 |
tataaaccctcttcaggttcaaggagtgtcgtttggaaccgtaaatagggactaataaggtgaatgttttactcctctcaaacaaattataggtgaatgt |
45390250 |
T |
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| Q |
208 |
tcacaggttgtaactcatcaagttaaattgagctcatctatacataaaagagtactgtattttagtaacatctatacacgaaaagaa |
294 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
45390251 |
tcacaggttgtaactcatcaagttaaattgagctcatctatacataaaagagtactgtattttagtaacatctatacacaaaaagaa |
45390337 |
T |
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