View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19228_low_8 (Length: 304)

Name: NF19228_low_8
Description: NF19228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19228_low_8
NF19228_low_8
[»] chr7 (10 HSPs)
chr7 (1-298)||(4863550-4863847)
chr7 (113-268)||(4784035-4784187)
chr7 (5-299)||(4697359-4697647)
chr7 (113-268)||(4816464-4816616)
chr7 (137-279)||(4672440-4672582)
chr7 (237-279)||(4630791-4630833)
chr7 (243-279)||(4653390-4653426)
chr7 (140-268)||(4712275-4712403)
chr7 (141-263)||(4636631-4636753)
chr7 (141-181)||(4643454-4643494)
[»] chr4 (1 HSPs)
chr4 (141-201)||(18926009-18926069)


Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 4863550 - 4863847
Alignment:
Q  1 caataacagatgctagcataagacatgaaactacaacaacaacgacgataactatggttgatttcttcgactgctcagttggtaaaccttgttctgtggg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4863550 caataacagatgctagcataagacatgaaactacaacaacaacgacgataactatggttgatttcttcgactgctcagttggtaaaccttgttctgtggg 4863649  T
Q  101 agataggataaagggttttggattcagtccaaagaaattattatttttatcgcttattttaaaaatctcgattccattcaacgtaacatcacggtatttt 200  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4863650 agatagaataaagggttttggattcagtccaaagaaattattatttttatcgcttattttaaaaatctcgattccattcaacgtaacatcacggtatttt 4863749  T
Q  201 gtaaacatggtctttggtaattgttgtaacttgagcgaaaggttaactctttcaatttgagagcttccttcttcagagtttatagacacagtataatc 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4863750 gtaaacatggtctttggtaattgttgtaacttgagcgaaaggttaactctttcaatttgagagcttccttcttcagagtttatagacacagtataatc 4863847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 113 - 268
Target Start/End: Complemental strand, 4784187 - 4784035
Alignment:
Q  113 gggttttggattcagtccaaagaaattattatttttatcgcttattttaaaaatctcgattccattcaacgtaacatcacggtattttgtaaacatggtc 212  Q
    |||||||||||||| |||||||| ||||||   |||||| |||||||| |||||||| |||||||||||||| |||||||| |||   |||  ||| |      
T  4784187 gggttttggattcactccaaagagattatt---tttatcacttattttcaaaatctcaattccattcaacgtgacatcacgatataccgtaggcataggt 4784091  T
Q  213 tttggtaattgttgtaacttgagcgaaaggttaactctttcaatttgagagcttcc 268  Q
    ||||||||| |||||| ||||| |||||| |||||| |||||||||||||||||||    
T  4784090 tttggtaatcgttgtagcttgatcgaaagattaactttttcaatttgagagcttcc 4784035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 5 - 299
Target Start/End: Complemental strand, 4697647 - 4697359
Alignment:
Q  5 aacagatgctagcataagacatgaaactacaacaacaacgacgataactatggttgatttcttcgactgctcagttggtaaaccttgttctgtgggagat 104  Q
    |||| |||||||||  |||||||||||||||||||||| ||   ||||| | ||||||||||||   || | |||||||||| | | |||  ||| ||||    
T  4697647 aacaaatgctagcaagagacatgaaactacaacaacaagga---taactgttgttgatttcttctgttgtttagttggtaaaacattttccttggaagat 4697551  T
Q  105 aggataaagggttttggattcagtccaaagaaattattatttttatcgcttattttaaaaatctcgattccattcaacgtaacatcacggtattttgtaa 204  Q
    |   |||   ||||||||||   |||||||| ||||| |||||||||  ||||||| ||||||||||| |||||||| || ||||||| |||| |||| |    
T  4697550 atattaa---gttttggatttgatccaaagagattatcatttttatcatttattttcaaaatctcgatgccattcaatgtgacatcaccgtatcttgtga 4697454  T
Q  205 acatg-gtctttggtaattgttgtaacttgagcgaaaggttaactctttcaatttgagagcttccttcttcagagtttatagacacagtataatct 299  Q
    | ||  ||| | |||  | |||||| |||||  ||||| |||| |||||||||||||||||||||||||| |||||  |||||||||| |||||||    
T  4697453 agatacgtcct-ggtgctcgttgtagcttgattgaaagattaagtctttcaatttgagagcttccttcttgagagtgcatagacacagcataatct 4697359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 113 - 268
Target Start/End: Complemental strand, 4816616 - 4816464
Alignment:
Q  113 gggttttggattcagtccaaagaaattattatttttatcgcttattttaaaaatctcgattccattcaacgtaacatcacggtattttgtaaacatggtc 212  Q
    |||||||||||||| |||||||| ||||||   |||||| |||||||| |||||||| |||||||||||||| |||||||| |||   | |  ||| |      
T  4816616 gggttttggattcactccaaagagattatt---tttatcacttattttcaaaatctcaattccattcaacgtgacatcacgatataccgaaggcataggt 4816520  T
Q  213 tttggtaattgttgtaacttgagcgaaaggttaactctttcaatttgagagcttcc 268  Q
    ||||||||| | |||| ||||| |||||| |||||| |||||||||||||||||||    
T  4816519 tttggtaatcgatgtagcttgatcgaaagattaactttttcaatttgagagcttcc 4816464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 137 - 279
Target Start/End: Original strand, 4672440 - 4672582
Alignment:
Q  137 attattatttttatcgcttattttaaaaatctcgattccattcaacgtaacatcacggtattttgtaaacatggtctttggtaattgttgtaacttgagc 236  Q
    ||||||||||||||| |||| ||| ||||||||||||||||| || || ||||||| || ||||||  |  |  | |||| || | |||| | ||| |      
T  4672440 attattatttttatcacttactttgaaaatctcgattccatttaatgtgacatcactgtcttttgtgtagttcatatttgttagtggttgaagcttaata 4672539  T
Q  237 gaaaggttaactctttcaatttgagagcttccttcttcagagt 279  Q
    ||||| ||||||||||||||||||||||||||||||| |||||    
T  4672540 gaaagattaactctttcaatttgagagcttccttcttgagagt 4672582  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 279
Target Start/End: Original strand, 4630791 - 4630833
Alignment:
Q  237 gaaaggttaactctttcaatttgagagcttccttcttcagagt 279  Q
    ||||| ||||||||||||||||||||||||||||||| |||||    
T  4630791 gaaagattaactctttcaatttgagagcttccttcttgagagt 4630833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 279
Target Start/End: Original strand, 4653390 - 4653426
Alignment:
Q  243 ttaactctttcaatttgagagcttccttcttcagagt 279  Q
    ||||||||||||||||||| |||||||||||||||||    
T  4653390 ttaactctttcaatttgagtgcttccttcttcagagt 4653426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 268
Target Start/End: Complemental strand, 4712403 - 4712275
Alignment:
Q  140 attatttttatcgcttattttaaaaatctcgattccattcaacgtaacatcacggtattttgtaaacatggtctttggtaattgttgtaacttgagcgaa 239  Q
    |||||||||||| |||||||| |||||||| ||||||||||   | ||||||||||| |||||  | ||  | | ||||  | |||| | ||| |  |||    
T  4712403 attatttttatcacttattttgaaaatctcaattccattcattatgacatcacggtaatttgtgtagatactttctggttctcgttgaagcttaattgaa 4712304  T
Q  240 aggttaactctttcaatttgagagcttcc 268  Q
    ||||||||||||||||||| |||||||||    
T  4712303 aggttaactctttcaatttcagagcttcc 4712275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 263
Target Start/End: Original strand, 4636631 - 4636753
Alignment:
Q  141 ttatttttatcgcttattttaaaaatctcgattccattcaacgtaacatcacggtattttgtaaacatggtctttggtaattgttgtaacttgagcgaaa 240  Q
    |||| |||||| || ||||| ||||||||||||||||| |   |||||||||| |||  ||||  |||||  | ||||||| |||| | |||||  ||||    
T  4636631 ttatatttatcactaattttgaaaatctcgattccattaagaataacatcacgatatactgtaggcatgggttgtggtaatcgttgaagcttgattgaaa 4636730  T
Q  241 ggttaactctttcaatttgagag 263  Q
    | | |||||||||||||||||||    
T  4636731 gataaactctttcaatttgagag 4636753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 181
Target Start/End: Original strand, 4643454 - 4643494
Alignment:
Q  141 ttatttttatcgcttattttaaaaatctcgattccattcaa 181  Q
    |||||||| || |||||||| ||||||||||||||||||||    
T  4643454 ttatttttgtcacttatttttaaaatctcgattccattcaa 4643494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 201
Target Start/End: Complemental strand, 18926069 - 18926009
Alignment:
Q  141 ttatttttatcgcttattttaaaaatctcgattccattcaacgtaacatcacggtattttg 201  Q
    |||||||| || |||||||| ||||||||||| |||||||| || |||| |||||||||||    
T  18926069 ttatttttgtcacttattttcaaaatctcgatcccattcaatgtgacattacggtattttg 18926009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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