View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19229_high_4 (Length: 418)
Name: NF19229_high_4
Description: NF19229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19229_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 16 - 406
Target Start/End: Complemental strand, 43941423 - 43941033
Alignment:
| Q |
16 |
caagattgaaggtatttcatcgcaccatctcaagaggttaatagtgtgagcacttggtatctcatcaacatcagacataatcaataagtcatcatctgta |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43941423 |
caagattgaaggtatttcatcgcaccatctcaagaggttaatagtgtgagcacttggtatctcatcaacatcagacataatcaataagtcatcatctgta |
43941324 |
T |
|
| Q |
116 |
atacctgcaatcttaaggagttgatccaatgctacacgctgatatgcctcctcaacaaatggattttctcctttcttaaatcttccaccgatagtcccat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43941323 |
atacctgcaatcttaaggagttgatccaatgctacacgctgataagcctcctcaacaaatggattttctcctttcttaaatcttccaccgatagtcccat |
43941224 |
T |
|
| Q |
216 |
aagttaatcggggctcaataaatttgaatttctccctattgctattgaaaaccagaggcttgggcaatccagtaaatgttgagtttgactctaggatcac |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43941223 |
aagttaatcggggctcaataaatttgaatttctccctattgctattgaaaaccagaggcttgggcaatccagtaaatgttgagtttgactctaggatcac |
43941124 |
T |
|
| Q |
316 |
aaattcggctacataggggtacaattctttccaacgcaaggtgagtatttcgatctcattactaaacaacacggcatcataaacacgcctt |
406 |
Q |
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| T |
43941123 |
aaattcggctacgtaggggtacaattctttccaacgcaaggtgagtatttcgatctcattactaaacaacacggcatcataaacacgcctt |
43941033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 16 - 406
Target Start/End: Original strand, 37476506 - 37476896
Alignment:
| Q |
16 |
caagattgaaggtatttcatcgcaccatctcaagaggttaatagtgtgagcacttggtatctcatcaacatcagacataatcaataagtcatcatctgta |
115 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
37476506 |
caagactgaaggtatttcatcgcaccatctcaagaggttaatagtgtgagcacttggtatctcatccacatcagacataatcaacaagtcatcatctgta |
37476605 |
T |
|
| Q |
116 |
atacctgcaatcttaaggagttgatccaatgctacacgctgatatgcctcctcaacaaatggattttctcctttcttaaatcttccaccgatagtcccat |
215 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||| || ||||||| |
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| T |
37476606 |
ataccagcaatcttaaggagttgatccaatgctacacgctgatatgcctcctcaacaaacgggttttctcctttcctaaatcttccaccaattgtcccat |
37476705 |
T |
|
| Q |
216 |
aagttaatcggggctcaataaatttgaatttctccctattgctattgaaaaccagaggcttgggcaatccagtaaatgttgagtttgactctaggatcac |
315 |
Q |
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||||||| || ||||| | |||||||| | ||||||||| | |||||||||||||||||| ||||||||||||||||| ||||||||||| |||| ||| |
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| T |
37476706 |
aagttaaccgtggctcgacgaatttgaactgctccctattaccattgaaaaccagaggcttaggcaatccagtaaatgtagagtttgactcaaggagcac |
37476805 |
T |
|
| Q |
316 |
aaattcggctacataggggtacaattctttccaacgcaaggtgagtatttcgatctcattactaaacaacacggcatcataaacacgcctt |
406 |
Q |
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|||||| |||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||| |
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| T |
37476806 |
aaattcagctatgtaggggtacaattctttccaacgcaaggtaagtatttcaatctcattactaaacaacacagcatcataaacacgcctt |
37476896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 11912582 - 11912643
Alignment:
| Q |
38 |
caccatctcaagaggttaatagtgtgagcacttggtatctcatcaacatcagacataatcaa |
99 |
Q |
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||||| |||||||| ||||| ||||| ||||| || |||||||||||||| ||||| ||||| |
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| T |
11912582 |
caccacctcaagagattaattgtgtgtgcactgggaatctcatcaacatcggacattatcaa |
11912643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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