View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19229_low_1 (Length: 722)
Name: NF19229_low_1
Description: NF19229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19229_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 414; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 213 - 710
Target Start/End: Original strand, 26147127 - 26147625
Alignment:
| Q |
213 |
gaggccctaaatacatgacgatggtcatatgatggtgtgcatttttacatcatatgtactttttgacagattaatgttaaaaaatagtttattttcgtgt |
312 |
Q |
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| T |
26147127 |
gaggccctaaatacatgacgatggtcatatgatggtgtgcattttaacatcatatgtactttttgacagattaaagttaaaaaatagtttattttcgtgt |
26147226 |
T |
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| Q |
313 |
aagagaaaacagtctatccaccaacgtcaaagtaatgatatatttttcttttgttgctaaaaatcaatatttaatttgaaacaagccacctcnnnnnnnc |
412 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||| | |
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| T |
26147227 |
aagagaaaacagtctatccaccaacgtcaaagtaataatatatttttcttcttttgctaaaaatcaatatttaatttgaaacaagccacctctttttttc |
26147326 |
T |
|
| Q |
413 |
ccgatgtctattacgaaaggctagaagaaaaatattaaaagattcgtaaaataataatgaattcgaattacaaatatttttatatgagatatctattcca |
512 |
Q |
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| T |
26147327 |
ccgatgtctattacgaaaggctagaagaaaaataataaaagattcgtaaaaaaataatgaattcgaattacaaatatttttatatgagatatctattcca |
26147426 |
T |
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| Q |
513 |
tgagctaaaggggcaacaatctttttatgaaaaagggacaaaaatgattcatcaatatactttagagatatttaataatccacct-attttttgtgcaaa |
611 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
26147427 |
tgagctaaaggggtaacaatctttttatgaaaaagggacaaaaatgattcatcaatatactttagagatatttaataatccacctgtttttttgttcaaa |
26147526 |
T |
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| Q |
612 |
taattaatcgaaatttattgaagaatttcttaaaaaaccataattattataaactatataattaaggtaaacacacagattaaaaactaattctatatt |
710 |
Q |
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| T |
26147527 |
taattattcgaaatttactgaagaatttcttgaaaaaccataattattataaactatataattaaggtaaacacacagattaaaaaccaattctatatt |
26147625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 19 - 121
Target Start/End: Original strand, 26146903 - 26147007
Alignment:
| Q |
19 |
gatctgacgaaactttatatgtgataacaatcatgtgtataattatccatttgtcgttataatattgaccacaagac--agattgtgtcatccttgactt |
116 |
Q |
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|||| |||||||||||||||||||||| |||||||||||||||| | ||||||| |||| |||||||||||||||| |||||||||||||||| |||| |
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| T |
26146903 |
gatcggacgaaactttatatgtgataatgatcatgtgtataattacctatttgtccttatgatattgaccacaagacatagattgtgtcatccttaactt |
26147002 |
T |
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| Q |
117 |
aattc |
121 |
Q |
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||||| |
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| T |
26147003 |
aattc |
26147007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 544 - 591
Target Start/End: Original strand, 21228643 - 21228690
Alignment:
| Q |
544 |
aaagggacaaaaatgattcatcaatatactttagagatatttaataat |
591 |
Q |
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|||| |||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
21228643 |
aaagcgacaaatatgattcatcaatgtactttagagatatttaataat |
21228690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 544 - 591
Target Start/End: Original strand, 21229278 - 21229325
Alignment:
| Q |
544 |
aaagggacaaaaatgattcatcaatatactttagagatatttaataat |
591 |
Q |
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|||| |||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
21229278 |
aaagcgacaaatatgattcatcaatgtactttagagatatttaataat |
21229325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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