View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19229_low_2 (Length: 715)

Name: NF19229_low_2
Description: NF19229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19229_low_2
NF19229_low_2
[»] chr5 (11 HSPs)
chr5 (18-715)||(40598102-40598799)
chr5 (318-609)||(40277089-40277380)
chr5 (120-715)||(40333000-40333598)
chr5 (37-715)||(40386195-40386876)
chr5 (122-683)||(40376035-40376599)
chr5 (21-258)||(40283062-40283299)
chr5 (409-539)||(40257607-40257737)
chr5 (309-433)||(40310350-40310474)
chr5 (117-241)||(40276846-40276970)
chr5 (120-213)||(40302840-40302930)
chr5 (146-212)||(40310190-40310256)


Alignment Details
Target: chr5 (Bit Score: 678; Significance: 0; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 678; E-Value: 0
Query Start/End: Original strand, 18 - 715
Target Start/End: Complemental strand, 40598799 - 40598102
Alignment:
18 aaggcggtaaagatggtgttagaggacgatgaaggaaagaaatatctatctgattggttcggcaaagtctttgaagaagtcgaaacagaaaagaataggc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
40598799 aaggcggtaaagatggtgttagaggacgatgaaggaaagaaatatctatctgattggttcggcaaagtctttgaagaagtcgaaacagaaaagaataggc 40598700  T
118 tgatttcaaatcgagatcttgtgcgcgtaaaagttgaagcaactgatcacaaaactgaaaaggtcaacgatgctgtgtttgagtggctaaaagaaacaga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
40598699 tgatttcaaatcgagatcttgtgcgcgtaaaagttgaagcaactgatcacaaaactgaaaaggtcaacgatgctgtgtttgagtggctaaaagaaacaga 40598600  T
218 tatactcatgcaagaggttgaaaatctgacactacaatcaagaaaacgacaatggaatgaatttaggaaattgctgagaaaaataactgcgttgaatgta 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
40598599 tatactcatgcaagaggttgaaaatctgacactacaatcaagaaaacgacaatggaatgaatttaggaaattgctgagaaaaataactgcgttgaatgta 40598500  T
318 aaatgcgaatttgatccattttcaactccaattccaagtttagagcacttctcttcaggaaatattttgtgttttaagtctagagataagacttcagatc 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
40598499 aaatgcgaatttgatccattttcaactccaattccaagtttagagcacttctcttcaggaaatattttgtgttttaagtctagagataagacttcagatc 40598400  T
418 aaattttagaggcactgcgagatgataattgctctatgattggattgtatggtagcaagggctctggtaagacagcgttggcaaaagcaatgggtgagaa 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
40598399 aaattttagaggcactgcgagatgataattgctctatgattggattgtatggtagcaagggctctggtaagacagcgttggcaaaagcaatgggtgagaa 40598300  T
518 agttaagtatctaaagatttttcatgaggttttatttgccacggtgacgcaaaacctgaatatcagaactatgcaagaagaaattgctgacttgttagac 617  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
40598299 agttaagcatctaaagatttttcatgaggttttatttgccacggtgacgcaaaacctgaatatcagaactatgcaagaagaaattgctgacttgttagac 40598200  T
618 atgacattcgatagaaacagtgaagctggaagagcaagaagaatattctcaagaatagaaagtatgagtcgtccaattctagtgattttcgatgatgt 715  Q
    ||||||||||||| ||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
40598199 atgacattcgataaaaaaagtgaaactgtaagagcaagaagaatattctcaagaatagaaagtatgagtcgtccaattctagtgattttcgatgatgt 40598102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 318 - 609
Target Start/End: Original strand, 40277089 - 40277380
Alignment:
318 aaatgcgaatttgatccattttcaactccaattccaagtttagagcacttctcttcaggaaatattttgtgttttaagtctagagataagacttcagatc 417  Q
    ||||| |||||||| ||||||||||||| ||||||||||||||||||||| |||   ||||||||| |||||||||||||||||||  ||||||||||||    
40277089 aaatgtgaatttgacccattttcaactcgaattccaagtttagagcacttttctaatggaaatattatgtgttttaagtctagagaggagacttcagatc 40277188  T
418 aaattttagaggcactgcgagatgataattgctctatgattggattgtatggtagcaagggctctggtaagacagcgttggcaaaagcaatgggtgagaa 517  Q
    || ||||||||||| |    |||||| |||| ||||||||||| ||||||||||   |||| |||||||| ||||| ||||  |||||||||||||||||    
40277189 aacttttagaggcattcaaggatgatgattgttctatgattggcttgtatggtaagcagggatctggtaaaacagcattggtgaaagcaatgggtgagaa 40277288  T
518 agttaagtatctaaagatttttcatgaggttttatttgccacggtgacgcaaaacctgaatatcagaactatgcaagaagaaattgctgact 609  Q
    ||| |||||| |||| |||||||||||  ||||||||| ||  |||||  ||||||  ||||||| | | |||||||| |||||||||||||    
40277289 agtcaagtatttaaatatttttcatgaaattttatttgtcagtgtgaccaaaaacccaaatatcacagcaatgcaagatgaaattgctgact 40277380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 120 - 715
Target Start/End: Original strand, 40333000 - 40333598
Alignment:
120 atttcaaatcgagatcttgtgcgcgtaaaagttgaagcaactgatcacaaaactgaaaaggtcaacgatgctgtgtttgagtggctaaaagaaacagata 219  Q
    ||||||||||| |||| |||||| | |||||||||||||| |||||  |||||||||||||| |  |||| |||||||||||||||||||||| |||| |    
40333000 atttcaaatcgtgatcgtgtgcgtgcaaaagttgaagcaattgatcgtaaaactgaaaaggttagagatgttgtgtttgagtggctaaaagaagcagaca 40333099  T
220 tactcatgcaagaggttgaaaatctgacactacaatcaagaaaacgacaatggaatgaatttaggaaattgctgagaaaaataactgcgttgaatgtaaa 319  Q
    || |||||||| |  | || ||||| | | ||||||||| |  || |  ||||| ||||||||  || |||| |  |||||| || ||  | |||   ||    
40333100 taatcatgcaaaaaatggagaatcttaaattacaatcaaaaccaccatcatggattgaatttaataagttgcaggaaaaaattacagcactaaataagaa 40333199  T
320 atgcgaatttgatccattttcaactccaattccaagtttagagcacttctcttcaggaaatatttt---gtgttttaagtctagagataagacttcagat 416  Q
    |||  | |||||||||||||||||| |||||||||||||||| |||||||||| |||||||| |||   |||||| ||||| |  || ||| ||||||||    
40333200 atgtaattttgatccattttcaactacaattccaagtttagaacacttctctttaggaaataatttcgagtgtttcaagtcgacggagaaggcttcagat 40333299  T
417 caaattttagaggcactgcgagatgataattgctctatgattggattgtatggtagcaagggctctggtaagacagcgttggcaaaagcaatgggtgaga 516  Q
     || |||| |||||||||| |||||||||||| | |||||| |||||||| |||||    | ||||||||| ||  ||||||  |||| |||||   |||    
40333300 gaacttttggaggcactgcaagatgataattgttgtatgataggattgtacggtaggcgtgactctggtaaaactacgttggtgaaagtaatggaacaga 40333399  T
517 aagttaagtatctaaagatttttcatgaggttttatttgccacggtgacgcaaaacctgaatatcagaactatgcaagaagaaattgctgacttgttaga 616  Q
    ||||  | ||| | || |||||| ||||| ||||||||| ||  |||||  ||||||  ||||||| | | |||||||| |||||||||||||| ||  |    
40333400 aagtccaatatttgaatatttttgatgagattttatttgtcaatgtgaccaaaaacccaaatatcacagcaatgcaagatgaaattgctgacttcttgaa 40333499  T
617 catgacattcgatagaaacagtgaagctggaagagcaagaagaatattctcaagaatagaaagtatgagtcgtccaattctagtgattttcgatgatgt 715  Q
     || | ||| ||||||||||||||| ||||||||||||||| |||||| || | |||||||  ||||  ||||||||| || ||||| || ||||||||    
40333500 tataagattagatagaaacagtgaaactggaagagcaagaaaaatattatccacaatagaagatatggatcgtccaatacttgtgatctttgatgatgt 40333598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 37 - 715
Target Start/End: Original strand, 40386195 - 40386876
Alignment:
37 tagaggacgatgaaggaaagaaatatctatctgattggttcggcaaagtctttgaagaagtcgaaacagaaaagaataggctgatttcaaatcgagatct 136  Q
    ||||||| | ||| ||||| |||| | ||||||||||||| ||||||| || |    |||| |||| | ||||||| |  || ||||||||||| ||||     
40386195 tagaggaagttgatggaaataaatgtgtatctgattggtttggcaaaggctatatgaaagttgaaagacaaaagaagaaactcatttcaaatcgtgatcg 40386294  T
137 tgtgcgcgtaaaagttgaagcaactgatcacaaaactgaaaaggtcaacgatgctgtgtttgagtggctaaaagaaacagatatactcatgcaagaggtt 236  Q
    |||||| | | |||||||||||| |||    |||||||||||||| |  |||| |||||||||||||||||||||| |||| ||| |||||||| |  |     
40386295 tgtgcgtgcacaagttgaagcaattgacagtaaaactgaaaaggttagagatgttgtgtttgagtggctaaaagaagcagaaatagtcatgcaaaaaatg 40386394  T
237 gaaaatctgacactacaatcaagaaaacgacaatggaatgaatttaggaaattgctgagaaaaataactgcgttgaatgtaaaatgcgaatttgatccat 336  Q
    || ||||| | | ||||||||| |  || |  ||||| ||||||||  ||||||| |  |||||| || ||  | |||   |||||  | ||||| ||||    
40386395 gagaatcttaaattacaatcaaaaccaccatcatggattgaatttaataaattgcaggaaaaaattacagcactaaataagaaatgtaattttgagccat 40386494  T
337 tttcaactccaattccaagtttagagcacttctcttcaggaaatatttt---gtgttttaagtctagagataagacttcagatcaaattttagaggcact 433  Q
    |||||||| |||||||||||||||| |||||||||| |||||||| |||   |||||| ||||| |  || ||| |||||||| || |||| ||||||||    
40386495 tttcaactacaattccaagtttagaacacttctctttaggaaataatttcgagtgtttcaagtcgacggagaaggcttcagatgaacttttggaggcact 40386594  T
434 gcgagatgataattgctctatgattggattgtatggtagcaagggctctggtaagacagcgttggcaaaagcaatgggtgagaaagttaagtatctaaag 533  Q
    || |||||||||||| | |||||| |||||||| |||||    | ||||||||| ||  ||||||  |||| |||||   |||||||  | ||| | ||     
40386595 gcaagatgataattgttgtatgataggattgtacggtaggcgtgactctggtaaaactacgttggtgaaagtaatggaacagaaagtccaatatttgaat 40386694  T
534 atttttcatgaggttttatttgccacggtgacgcaaaacctgaatatcagaactatgcaagaagaaattgctgacttgttagacatgacattcgatagaa 633  Q
    |||||| ||||| ||||||||| ||  |||||  ||||||  ||||||| | | |||||||| |||||||||||||  ||  | || | ||| |||||||    
40386695 atttttgatgagattttatttgtcaatgtgaccaaaaacccaaatatcacagcaatgcaagatgaaattgctgactccttgaatataagatttgatagaa 40386794  T
634 acagtgaagctggaagagcaagaagaatattctcaagaatagaaagtatgagtcgtccaattctagtgattttcgatgatgt 715  Q
    ||||||||||||||||||||||||||||||| || | |||||||  ||||  ||||||||| || || || || ||||||||    
40386795 acagtgaagctggaagagcaagaagaatattatccacaatagaagatatggatcgtccaatacttgttatctttgatgatgt 40386876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 122 - 683
Target Start/End: Original strand, 40376035 - 40376599
Alignment:
122 ttcaaatcgagatcttgtgcgcgtaaaagttgaagcaactgatcacaaaactgaaaaggtcaacgatgctgtgtttgagtggctaaaagaaacagatata 221  Q
    ||||||||| |||| |||||  | |||||||||||||| |||||  ||||||||||||||||  |||| ||||||||||||||||||| ||||||| |||    
40376035 ttcaaatcgcgatcgtgtgcatgcaaaagttgaagcaattgatcctaaaactgaaaaggtcagagatgttgtgtttgagtggctaaaaaaaacagacata 40376134  T
222 ctcatgcaagaggttgaaaatctgacactacaatcaagaaaacgacaatggaatgaatttaggaaattgctgagaaaaataactgcgttgaatgtaaaat 321  Q
     |||| ||||| || || |||||  || ||||||||| |  || |  ||||| ||||||||  || |||| |  ||| || |  ||  | |||   ||||    
40376135 atcatacaagaagtggagaatcttgcagtacaatcaaaaccaccatcatggattgaatttaataatttgcaggaaaacattaaagcactaaataagaaat 40376234  T
322 gcgaatttgatccattttcaactccaattccaagtttagagcacttctcttcaggaaatatttt---gtgttttaagtctagagataagacttcagatca 418  Q
    |  | |||||||||||||||| |  ||||||||||||||| |||||||||| |||||||| |||   |||||| ||||| | ||| ||| |||||||| |    
40376235 gtaattttgatccattttcaattataattccaagtttagaacacttctctttaggaaataattttgagtgtttcaagtcgacagagaaggcttcagatga 40376334  T
419 aattttagaggcactgcgagatgataattgctctatgattggattgtatggtagcaagggctctggtaagacagcgttggcaaaagcaatgggtgagaaa 518  Q
    | |||| || ||||||| ||||||||||||   ||| || |||||||| |||||    | ||||||||| ||  | ||||  | || |||||||||||||    
40376335 acttttggaagcactgcaagatgataattgtcgtataataggattgtacggtaggcgtgactctggtaaaactacattggtgagagtaatgggtgagaaa 40376434  T
519 gttaagtatctaaagatttttcatgaggttttatttgccacggtgacgcaaaacctgaatatcagaactatgcaagaagaaattgctgacttgttagaca 618  Q
    || | || | |||| |||||| ||||| ||||||||| ||  |||||  ||||||  ||||||| | | |||||||| |||||||||||||  ||  | |    
40376435 gtcatgtttttaaatatttttgatgagattttatttgtcaatgtgaccaaaaacccaaatatcacagcaatgcaagatgaaattgctgactccttgaata 40376534  T
619 tgacattcgatagaaacagtgaagctggaagagcaagaagaatattctcaagaatagaaagtatg 683  Q
    | | ||| ||||||||||||||||||| ||||||||||| |||||| || | |||||||| ||||    
40376535 taagatttgatagaaacagtgaagctgaaagagcaagaaaaatattatccacaatagaaaatatg 40376599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 21 - 258
Target Start/End: Original strand, 40283062 - 40283299
Alignment:
21 gcggtaaagatggtgttagaggacgatgaaggaaagaaatatctatctgattggttcggcaaagtctttgaagaagtcgaaacagaaaagaataggctga 120  Q
    |||||||||| || | ||||||| | ||| ||||| |||| | |||||||||||||  |||||| || |    |||| |||| | ||||||| |  || |    
40283062 gcggtaaagaaggcggtagaggaagttgatggaaataaatgtttatctgattggtttagcaaaggctatatgaaagttgaaagacaaaagaagaaactca 40283161  T
121 tttcaaatcgagatcttgtgcgcgtaaaagttgaagcaactgatcacaaaactgaaaaggtcaacgatgctgtgtttgagtggctaaaagaaacagatat 220  Q
    |||||||||| |||| || ||| | |||||||||||||| ||||   |||||||||||||| |  |||| ||||||||||||||||||||||||||| ||    
40283162 tttcaaatcgtgatcgtgcgcgtgcaaaagttgaagcaattgattgtaaaactgaaaaggttagagatgttgtgtttgagtggctaaaagaaacagacat 40283261  T
221 actcatgcaagaggttgaaaatctgacactacaatcaa 258  Q
      |||| |||||  | || ||||| ||| |||||||||    
40283262 gatcatacaagaaatggagaatcttacaatacaatcaa 40283299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 409 - 539
Target Start/End: Complemental strand, 40257737 - 40257607
Alignment:
409 cttcagatcaaattttagaggcactgcgagatgataattgctctatgattggattgtatggtagcaagggctctggtaagacagcgttggcaaaagcaat 508  Q
    |||| |||||| |||| |||||||||| ||| | |||||||| ||| |||||||| ||||| |  |||||||||||||| |||  |||||  |||||| |    
40257737 cttcggatcaacttttggaggcactgcaagacggtaattgctatataattggattatatgggaagaagggctctggtaaaacaaagttggtgaaagcagt 40257638  T
509 gggtgagaaagttaagtatctaaagattttt 539  Q
     ||||||||||  |||||| |||||||||||    
40257637 tggtgagaaagccaagtatttaaagattttt 40257607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 309 - 433
Target Start/End: Original strand, 40310350 - 40310474
Alignment:
309 ttgaatgtaaaatgcgaatttgatccattttcaactccaattccaagtttagagcacttctcttcaggaaatattttgtgttttaagtctagagataaga 408  Q
    |||||| | ||||| || ||||| |||||||  | |||||||||||||||||||||||||||||| |||||| || | |||||| || ||| | |  |||    
40310350 ttgaatatcaaatgtgagtttgagccatttttcaatccaattccaagtttagagcacttctcttctggaaattttgtatgttttgagcctataaaagaga 40310449  T
409 cttcagatcaaattttagaggcact 433  Q
    ||||||||  | |||| ||||||||    
40310450 cttcagatagacttttggaggcact 40310474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 117 - 241
Target Start/End: Original strand, 40276846 - 40276970
Alignment:
117 ctgatttcaaatcgagatcttgtgcgcgtaaaagttgaagcaactgatcacaaaactgaaaaggtcaacgatgctgtgtttgagtggctaaaagaaacag 216  Q
    |||||||||||||| |||| |||| | | ||||  | |||||| |||||| | || ||| ||||| | ||||| |||| |  |||||||||||||| |||    
40276846 ctgatttcaaatcgtgatcgtgtgagtgcaaaatataaagcaattgatcatagaattgataaggtgagcgatgatgtgatcaagtggctaaaagaagcag 40276945  T
217 atatactcatgcaagaggttgaaaa 241  Q
    | |||||||| |||||||| |||||    
40276946 acatactcatacaagaggtagaaaa 40276970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 213
Target Start/End: Original strand, 40302840 - 40302930
Alignment:
120 atttcaaatcgagatcttgtgcgcgtaaaagttgaagcaactgatcacaaaactgaaaaggtcaacgatgctgtgtttgagtggctaaaagaaa 213  Q
    |||||||||||| |||||||||| | ||||| ||||||||||| |   |||||||||||  ||||| || || | ||||||||||| |||||||    
40302840 atttcaaatcgatatcttgtgcgggaaaaagctgaagcaactgct---aaaactgaaaaaatcaacaatactatttttgagtggcttaaagaaa 40302930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 146 - 212
Target Start/End: Original strand, 40310190 - 40310256
Alignment:
146 aaaagttgaagcaactgatcacaaaactgaaaaggtcaacgatgctgtgtttgagtggctaaaagaa 212  Q
    |||| |||||||||| ||||| |||||| |||||||||| |||  |||  |||||||||||||||||    
40310190 aaaaattgaagcaaccgatcataaaactcaaaaggtcaatgatattgttcttgagtggctaaaagaa 40310256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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