View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19229_low_3 (Length: 447)
Name: NF19229_low_3
Description: NF19229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19229_low_3 |
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| [»] scaffold0268 (1 HSPs) |
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Alignment Details
Target: scaffold0268 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: scaffold0268
Description:
Target: scaffold0268; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 13 - 430
Target Start/End: Original strand, 22422 - 22839
Alignment:
| Q |
13 |
cagaccgattctgcatgttcccaatccaatacccaaaaatctgggaaatgtacaaaaaagccgaagcctcattctggaccgccgaagaagttgatctttc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22422 |
cagaccgattctgcatgttcccaatccaatacccaaaaatctgggaaatgtacaaaaaagccgaagcctcattctggaccgccgaagaagttgatctttc |
22521 |
T |
|
| Q |
113 |
ctccgatctcaagaactggaacaacctcactgacggtgaacgccacttcgtctctcacgttctcgccttcttcgccgcctcagacggaattgtccttgaa |
212 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
22522 |
ctccgatctcaagcactggaacaacctcacagacggcgaacgccacttcatctctcacgttcttgccttcttcgccgcctcagacggaattgtccttgaa |
22621 |
T |
|
| Q |
213 |
aatcttgccggaaggttcatgaaagaagttcaaatctccgaagcacgtgccttctatggtttccagattgcaattgaaaacatccattctgagatgtact |
312 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
22622 |
aatcttgccggaagattcatgaaagaagtccaaatctccgaagcacgtgccttctatggtttccaaattgcaattgaaaacatccattctgagatgtact |
22721 |
T |
|
| Q |
313 |
cccttctcattgaaacatatataagcgattctgctgaaaagaatcgcttatttcatgcaattgagacaattccatgtatcgcgaaaaaggctgattgggc |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22722 |
cccttctcattgaaacatatataagcgattctgctgaaaagaatcgcttatttcatgcaattgagacaattccatgtatcgcgaaaaaggctgattgggc |
22821 |
T |
|
| Q |
413 |
tatgaaatggatcgattc |
430 |
Q |
| |
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||||||||||| ||||| |
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| T |
22822 |
aatgaaatggattgattc |
22839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 13 - 430
Target Start/End: Complemental strand, 10197666 - 10197249
Alignment:
| Q |
13 |
cagaccgattctgcatgttcccaatccaatacccaaaaatctgggaaatgtacaaaaaagccgaagcctcattctggaccgccgaagaagttgatctttc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10197666 |
cagaccgattctgcatgttcccaatccaatacccaaaaatctgggaaatgtacaaaaaagccgaagcctcattctggaccgccgaagaagttgatctttc |
10197567 |
T |
|
| Q |
113 |
ctccgatctcaagaactggaacaacctcactgacggtgaacgccacttcgtctctcacgttctcgccttcttcgccgcctcagacggaattgtccttgaa |
212 |
Q |
| |
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||||||||||||| |||||||||||||||| ||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
10197566 |
ctccgatctcaagcactggaacaacctcacagacggcgaacgccacttcatctctcacgttcttgccttcttcgccgcctcagacggaattgtccttgaa |
10197467 |
T |
|
| Q |
213 |
aatcttgccggaaggttcatgaaagaagttcaaatctccgaagcacgtgccttctatggtttccagattgcaattgaaaacatccattctgagatgtact |
312 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
10197466 |
aatcttgccggaagattcatgaaagaagtccaaatctccgaagcacgtgccttctatggtttccaaattgcaattgaaaacatccattctgagatgtact |
10197367 |
T |
|
| Q |
313 |
cccttctcattgaaacatatataagcgattctgctgaaaagaatcgcttatttcatgcaattgagacaattccatgtatcgcgaaaaaggctgattgggc |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10197366 |
cccttctcattgaaacatatataagcgattctgctgaaaagaatcgcttatttcatgcaattgagacaattccatgtatcgcgaaaaaggctgattgggc |
10197267 |
T |
|
| Q |
413 |
tatgaaatggatcgattc |
430 |
Q |
| |
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||||||||||| ||||| |
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| T |
10197266 |
aatgaaatggattgattc |
10197249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 13 - 430
Target Start/End: Original strand, 19456933 - 19457350
Alignment:
| Q |
13 |
cagaccgattctgcatgttcccaatccaatacccaaaaatctgggaaatgtacaaaaaagccgaagcctcattctggaccgccgaagaagttgatctttc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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|
| T |
19456933 |
cagaccgattctgcatgttcccaatccaatacccaaaaatctgggaaatgtacaaaaaagccgaagcctcattctggaccgctgaagaagtcgatctttc |
19457032 |
T |
|
| Q |
113 |
ctccgatctcaagaactggaacaacctcactgacggtgaacgccacttcgtctctcacgttctcgccttcttcgccgcctcagacggaattgtccttgaa |
212 |
Q |
| |
|
||||||||||||| ||||| | |||||||| ||||| |||||||||||| ||||||| || |||||||||||||| ||||| ||||| || ||||||||| |
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| T |
19457033 |
ctccgatctcaagcactggcaaaacctcaccgacggcgaacgccacttcatctctcatgtcctcgccttcttcgctgcctccgacggcatcgtccttgaa |
19457132 |
T |
|
| Q |
213 |
aatcttgccggaaggttcatgaaagaagttcaaatctccgaagcacgtgccttctatggtttccagattgcaattgaaaacatccattctgagatgtact |
312 |
Q |
| |
|
||||| ||||| || || ||||||||| | ||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| | |
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|
| T |
19457133 |
aatctcgccggtagatttatgaaagaaatccaagtctctgaagcacgtgccttctacggtttccagattgcaattgaaaacatccactctgagatgtatt |
19457232 |
T |
|
| Q |
313 |
cccttctcattgaaacatatataagcgattctgctgaaaagaatcgcttatttcatgcaattgagacaattccatgtatcgcgaaaaaggctgattgggc |
412 |
Q |
| |
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| |||||| | ||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||| |
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| T |
19457233 |
ctcttctcctcgaaacgtatataagcgattccgctgaaaagaatcgcttatttcatgcaattgaaacaattccatgtatcgcgaagaaagctgattgggc |
19457332 |
T |
|
| Q |
413 |
tatgaaatggatcgattc |
430 |
Q |
| |
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||||||||||||||||| |
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|
| T |
19457333 |
gatgaaatggatcgattc |
19457350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 13 - 430
Target Start/End: Complemental strand, 25026158 - 25025741
Alignment:
| Q |
13 |
cagaccgattctgcatgttcccaatccaatacccaaaaatctgggaaatgtacaaaaaagccgaagcctcattctggaccgccgaagaagttgatctttc |
112 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
25026158 |
cagaccgattctgtatgttcccaatccaatacccaaaaatctgggaaatgtacaaaaaagccgaagcctctttctggaccgccgaagaagtcgatctttc |
25026059 |
T |
|
| Q |
113 |
ctccgatctcaagaactggaacaacctcactgacggtgaacgccacttcgtctctcacgttctcgccttcttcgccgcctcagacggaattgtccttgaa |
212 |
Q |
| |
|
||||||||| | |||||||||||||||| ||||| |||||||||||| |||||||| | |||||||||||||||||||| ||||| || ||||| ||| |
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|
| T |
25026058 |
ctccgatcttcaacactggaacaacctcaccgacggcgaacgccacttcatctctcacatcctcgccttcttcgccgcctccgacggtatcgtcctcgaa |
25025959 |
T |
|
| Q |
213 |
aatcttgccggaaggttcatgaaagaagttcaaatctccgaagcacgtgccttctatggtttccagattgcaattgaaaacatccattctgagatgtact |
312 |
Q |
| |
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||||| |||||||| ||||||||||||||||||||||| ||||| ||||| ||||| || || || || || |||||||||||||| || |||||||| | |
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|
| T |
25025958 |
aatctcgccggaagattcatgaaagaagttcaaatctctgaagcgcgtgctttctacgggtttcaaatcgctattgaaaacatccactcagagatgtatt |
25025859 |
T |
|
| Q |
313 |
cccttctcattgaaacatatataagcgattctgctgaaaagaatcgcttatttcatgcaattgagacaattccatgtatcgcgaaaaaggctgattgggc |
412 |
Q |
| |
|
| |||||| | ||||| ||||||||||||||||||||||||||||| |||||||| |||||||| |||||||| ||||| || || || ||||||||||| |
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|
| T |
25025858 |
ctcttctcctcgaaacgtatataagcgattctgctgaaaagaatcgattatttcacgcaattgacacaattccgtgtattgctaagaaagctgattgggc |
25025759 |
T |
|
| Q |
413 |
tatgaaatggatcgattc |
430 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
25025758 |
tttgaaatggatcgattc |
25025741 |
T |
|
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