View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19229_low_5 (Length: 360)
Name: NF19229_low_5
Description: NF19229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19229_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 17 - 345
Target Start/End: Original strand, 33657717 - 33658045
Alignment:
| Q |
17 |
tattatatatcatttcgggcaagtttaatttattgtatgtactactactaattaacttaattataattgtataaatcatcatgatcaggtatggagagat |
116 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33657717 |
tattatatatcatttcgggtaagtttaatttattgtatgtactactactaattaacttaattataattgtataaatcatcatgatcaggtatggagagat |
33657816 |
T |
|
| Q |
117 |
ttttaaaacacgcatactaggatgtcaatgtgtgatgctagcaagtcctgaggctgcaagatttgtgttggtgactcattctcatttgtttaagcctaca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33657817 |
ttttaaaacacgcatactaggatgtcaatgtgtgatgctagcaagtcctgaggctgcaagatttgtgttggtgactcattctcatttgtttaagcctaca |
33657916 |
T |
|
| Q |
217 |
taccccaaaagcaaagagaaacttattggttcttctgcattattctttcaccaaggagattaccacactcgcattaggaaacttgttcaaacctcacttt |
316 |
Q |
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|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
33657917 |
taccccaaaagcaaagagaagcttattggttcttctgcattgttctttcaccaaggagattaccacacacgcattaggaaacttgttcaaacctcacttt |
33658016 |
T |
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| Q |
317 |
ctcctgaatcaatcaagaaattgatccct |
345 |
Q |
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| T |
33658017 |
ctcctgaatcaatcaagaaattgatccct |
33658045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 100 - 348
Target Start/End: Original strand, 33698335 - 33698583
Alignment:
| Q |
100 |
atcaggtatggagagatttttaaaacacgcatactaggatgtcaatgtgtgatgctagcaagtcctgaggctgcaagatttgtgttggtgactcattctc |
199 |
Q |
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| T |
33698335 |
atcagatatggagaaatatttaagacacacatattaggatgtccatgtgtgatgttaacaagtcctgaggctgcaagatttgtgttggtgactcattctc |
33698434 |
T |
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| Q |
200 |
atttgtttaagcctacataccccaaaagcaaagagaaacttattggttcttctgcattattctttcaccaaggagattaccacactcgcattaggaaact |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
33698435 |
atttgtttaagcctacataccccaaaagcaaagagaaacttattggttcttctgcattattctttcaccaaggagattaccacactcgcatcagaaaact |
33698534 |
T |
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| Q |
300 |
tgttcaaacctcactttctcctgaatcaatcaagaaattgatccctgat |
348 |
Q |
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||||||| ||| ||| |||||||||||||||||||||||||||||||| |
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| T |
33698535 |
cgttcaaaactctcttgctcctgaatcaatcaagaaattgatccctgat |
33698583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 233
Target Start/End: Original strand, 5859496 - 5859593
Alignment:
| Q |
136 |
ggatgtcaatgtgtgatgctagcaagtcctgaggctgcaagatttgtgttggtgactcattctcatttgtttaagcctacataccccaaaagcaaaga |
233 |
Q |
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|||||| | ||||||||| | ||||||||||| |||||| | |||||||||||||| || ||||| || ||||| || ||||| || ||||||||||| |
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| T |
5859496 |
ggatgtaagtgtgtgatgttggcaagtcctgaagctgcacgttttgtgttggtgacacaatctcacttatttaaaccaacatatcctaaaagcaaaga |
5859593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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