View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19229_low_7 (Length: 329)
Name: NF19229_low_7
Description: NF19229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19229_low_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 13 - 315
Target Start/End: Complemental strand, 1487419 - 1487117
Alignment:
| Q |
13 |
aatataaacaatacacaagtacttgacatgttaccatattcactaagtacttccctagtggccgtcatcttttccggtttcaaagctaacttttgttcaa |
112 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
1487419 |
aatataaacaatacacaagcacttgacatgttaccatattcactaagtacttccctagtggccttcatcttttccggtttcaaagctaacttttgttcaa |
1487320 |
T |
|
| Q |
113 |
catggtccaaaattgcaggtccacctgggtggacaatccaaaaaattgcattgtaatcagagatgcctaatggttggaatgccttaactagttctttatc |
212 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1487319 |
catggtccaaaattgcaggtccgcctgggtggacaatccaaaaaattgcattgtaatcagagatgcctaatggttggaatgccttaactagttctttatc |
1487220 |
T |
|
| Q |
213 |
gatgttctttgagataatttcagggacatctttacgaagattaaatgttagtccaacttcacgaagttggccactaattgcttcttcactatcaagagct |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
1487219 |
gatgttctttgagataatttcagggacatctttacgaagattaaatgttagtccaacttcacgaagttggccgctaattgcttcttcactatctagagct |
1487120 |
T |
|
| Q |
313 |
att |
315 |
Q |
| |
|
||| |
|
|
| T |
1487119 |
att |
1487117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 19 - 278
Target Start/End: Complemental strand, 1478742 - 1478483
Alignment:
| Q |
19 |
aacaatacacaagtacttgacatgttaccatattcactaagtacttccctagtggccgtcatcttttccggtttcaaagctaacttttgttcaacatggt |
118 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||| || ||||||||| |||||| |||| |
|
|
| T |
1478742 |
aacaatacacatgcgcttgacatgttaccatattcactaagtacttccctagtggccttcattttttcaggttttaagcctaacttttcttcaacttggt |
1478643 |
T |
|
| Q |
119 |
ccaaaattgcaggtccacctgggtggacaatccaaaaaattgcattgtaatcagagatgcctaatggttggaatgccttaactagttctttatcgatgtt |
218 |
Q |
| |
|
| | |||||| |||||||||||||| ||||||| || |||| ||| |||||||||||| |||||||||||| |||| || | | ||||||| ||||| |
|
|
| T |
1478642 |
ctagaattgcgggtccacctgggtgagcaatccagaagattgaattataatcagagatgtttaatggttggaaagcctcgaccaatgctttatcaatgtt |
1478543 |
T |
|
| Q |
219 |
ctttgagataatttcagggacatctttacgaagattaaatgttagtccaacttcacgaag |
278 |
Q |
| |
|
|||||| | ||| |||| ||||||||| |||| | ||||||||| ||| |||||||||| |
|
|
| T |
1478542 |
ctttgaaacaatcccaggaacatctttaagaaggtgaaatgttagaccagcttcacgaag |
1478483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 19 - 306
Target Start/End: Complemental strand, 1499983 - 1499696
Alignment:
| Q |
19 |
aacaatacacaagtacttgacatgttaccatattcactaagtacttccctagtggccgtcatcttttccggtttcaaagctaacttttgttcaacatggt |
118 |
Q |
| |
|
||||||||| | | ||| ||||| ||||||||||||||||| ||||||||| | || ||| |||||| | |||||| |||||||||| |||| || | |
|
|
| T |
1499983 |
aacaatacagatgcactagacatattaccatattcactaagcacttccctaacgaccctcaacttttcagctttcaagcctaacttttgctcaatttgat |
1499884 |
T |
|
| Q |
119 |
ccaaaattgcaggtccacctgggtggacaatccaaaaaattgcattgtaatcagagatgcctaatggttggaatgccttaactagttctttatcgatgtt |
218 |
Q |
| |
|
| | ||||||||| ||||| || || |||||||||| |||| || ||||||||||| ||||||||||| ||||||| ||||||| ||||||| || || |
|
|
| T |
1499883 |
ctagaattgcaggaccacccggatgagcaatccaaaagattgagttataatcagagattcctaatggttgaaatgcctcaactagtactttatcaatatt |
1499784 |
T |
|
| Q |
219 |
ctttgagataatttcagggacatctttacgaagattaaatgttagtccaacttcacgaagttggccactaattgcttcttcactatca |
306 |
Q |
| |
|
|||||||| ||| |||| |||||| ||||||| |||| ||||||| ||||||||||||||||| |||| ||| ||| ||||||||||| |
|
|
| T |
1499783 |
ctttgagacaatctcagagacatccttacgaatattatatgttagcccaacttcacgaagttgaccacaaatagctccttcactatca |
1499696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 16 - 278
Target Start/End: Complemental strand, 1482939 - 1482677
Alignment:
| Q |
16 |
ataaacaatacacaagtacttgacatgttaccatattcactaagtacttccctagtggccgtcatcttttccggtttcaaagctaacttttgttcaacat |
115 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||| || |||||||||||||||| | |
|
|
| T |
1482939 |
ataaacaatacacatgcacttgacatgttaccatattcactaagtacttctctagtggctttcatcttttcaggttttaagcctaacttttgttcaactt |
1482840 |
T |
|
| Q |
116 |
ggtccaaaattgcaggtccacctgggtggacaatccaaaaaattgcattgtaatcagagatgcctaatggttggaatgccttaactagttctttatcgat |
215 |
Q |
| |
|
| || | |||||| ||||||||||| || |||||||||| |||| ||||||||||| ||| |||||||||||| || | | | | ||||||| || |
|
|
| T |
1482839 |
gatcaagaattgcgggtccacctggatgagcaatccaaaagattgagttgtaatcagaaatgtttaatggttggaaagcatcgatcaatgctttatcaat |
1482740 |
T |
|
| Q |
216 |
gttctttgagataatttcagggacatctttacgaagattaaatgttagtccaacttcacgaag |
278 |
Q |
| |
|
||||||||| | ||| |||| ||||||||| |||| | ||||||||| ||| |||||||||| |
|
|
| T |
1482739 |
gttctttgaaacaatcccaggaacatctttaagaaggtgaaatgttagaccagcttcacgaag |
1482677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 16 - 278
Target Start/End: Complemental strand, 1505723 - 1505461
Alignment:
| Q |
16 |
ataaacaatacacaagtacttgacatgttaccatattcactaagtacttccctagtggccgtcatcttttccggtttcaaagctaacttttgttcaacat |
115 |
Q |
| |
|
|||||||| ||||| | ||||||||| || |||||||||||||| ||||| |||||||| |||||||||| || || || ||||||||||| || || | |
|
|
| T |
1505723 |
ataaacaaaacacatgcacttgacatatttccatattcactaagcacttctctagtggctttcatcttttcaggctttaaggctaacttttgctctactt |
1505624 |
T |
|
| Q |
116 |
ggtccaaaattgcaggtccacctgggtggacaatccaaaaaattgcattgtaatcagagatgcctaatggttggaatgccttaactagttctttatcgat |
215 |
Q |
| |
|
| || ||||||||||| ||||| ||||| ||||||| || |||| ||||| ||||| | |||||||||||||| || | ||| | | |||||| ||| |
|
|
| T |
1505623 |
gatctaaaattgcagggccaccagggtgtgcaatccagaagattgagttgtagtcagaaactcctaatggttggaaagcatcaaccaatgctttattgat |
1505524 |
T |
|
| Q |
216 |
gttctttgagataatttcagggacatctttacgaagattaaatgttagtccaacttcacgaag |
278 |
Q |
| |
|
||||||||| | ||||||||| ||||||||| |||| | ||||||||||||| |||||||||| |
|
|
| T |
1505523 |
gttctttgaaacaatttcaggaacatctttaagaaggtgaaatgttagtccagcttcacgaag |
1505461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 16 - 311
Target Start/End: Complemental strand, 1492914 - 1492619
Alignment:
| Q |
16 |
ataaacaatacacaagtacttgacatgttaccatattcactaagtacttccctagtggccgtcatcttttccggtttcaaagctaacttttgttcaacat |
115 |
Q |
| |
|
|||||||||||||| | ||||||||| || ||||||||||| || || |||| ||||| |||||||||| || || || ||||||||||| || || | |
|
|
| T |
1492914 |
ataaacaatacacatgcacttgacatatttccatattcacttagcacctcccgtgtggctctcatcttttcgggctttaaggctaacttttgctctactt |
1492815 |
T |
|
| Q |
116 |
ggtccaaaattgcaggtccacctgggtggacaatccaaaaaattgcattgtaatcagagatgcctaatggttggaatgccttaactagttctttatcgat |
215 |
Q |
| |
|
|||| ||||||||||||||||| ||||| |||||||||| |||| |||||||||||||| || ||||||||||| |||| ||||| | |||||| || |
|
|
| T |
1492814 |
ggtctaaaattgcaggtccaccagggtgtgcaatccaaaagattgagttgtaatcagagattcccaatggttggaaagcctcaactaatgctttatttat |
1492715 |
T |
|
| Q |
216 |
gttctttgagataatttcagggacatctttacgaagattaaatgttagtccaacttcacgaagttggccactaattgcttcttcactatcaagagc |
311 |
Q |
| |
|
|| ||||| | ||| |||| ||||||||| |||| | |||||||| ||| |||||||||| || ||| ||| || ||||||||||| |||| |
|
|
| T |
1492714 |
attttttgacacaatcccaggaacatctttaagaaggtgaaatgttaacccagcttcacgaagatgaccatcaatggcaccttcactatcaggagc |
1492619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 278
Target Start/End: Complemental strand, 1509856 - 1509608
Alignment:
| Q |
19 |
aacaatacacaagtacttgacatgttaccatattcactaagtacttccctagtggccgtcatcttttccggtttcaaagctaacttttgttcaacatggt |
118 |
Q |
| |
|
||||||||||| | ||||||||| ||||||||||||||||| | | ||| ||||| |||| ||||| || ||||| ||||| ||||| |||| |
|
|
| T |
1509856 |
aacaatacacatgcacttgacatattaccatattcactaag---------aattgccttcatc-tttcaggttttaaggctaatttttgctcaacttggt |
1509767 |
T |
|
| Q |
119 |
ccaaaattgcaggtccacctgggtggacaatccaaaaaattgcattgtaatcagagatgcctaatggttggaatgccttaactagttctttatcgatgtt |
218 |
Q |
| |
|
| | |||||| | |||| ||||||| |||||||||| |||| ||||||||||||||| ||||||||| ||||||| || ||| ||| ||| ||||| |
|
|
| T |
1509766 |
caataattgcggctccatctgggtgagcaatccaaaatattgagttgtaatcagagatgtttaatggttgaaatgcctcaatcagtgcttaatcaatgtt |
1509667 |
T |
|
| Q |
219 |
ctttgagataatttcagggacatctttacgaagattaaatgttagtccaacttcacgaag |
278 |
Q |
| |
|
||||||| | | ||| |||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
1509666 |
-tttgagacagtcacagagacatctttaagaagacgaaatgttagtccaacttcacgaag |
1509608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 16 - 305
Target Start/End: Complemental strand, 44129320 - 44129031
Alignment:
| Q |
16 |
ataaacaatacacaagtacttgacatgttaccatattcactaagtacttccctagtggccgtcatcttttccggtttcaaagctaacttttgttcaacat |
115 |
Q |
| |
|
|||||||| ||||||| ||||||||| || |||||||||||||| ||||| || ||||| |||||||||| ||||| || ||||||||||| ||||| | |
|
|
| T |
44129320 |
ataaacaaaacacaagcacttgacatatttccatattcactaagcacttctctggtggctttcatcttttcaggttttaaggctaacttttgctcaactt |
44129221 |
T |
|
| Q |
116 |
ggtccaaaattgcaggtccacctgggtggacaatccaaaaaattgcattgtaatcagagatgcctaatggttggaatgccttaactagttctttatcgat |
215 |
Q |
| |
|
| || | ||||||||||||||| ||||| |||||||||| |||| |||||||||||| || |||||||||| ||| |||| ||| | |||||| ||| |
|
|
| T |
44129220 |
gatctagaattgcaggtccaccagggtgtgcaatccaaaagattgaattgtaatcagaaattcctaatggttcgaaagcctcaaccaaagctttattgat |
44129121 |
T |
|
| Q |
216 |
gttctttgagataatttcagggacatctttacgaagattaaatgttagtccaacttcacgaagttggccactaattgcttcttcactatc |
305 |
Q |
| |
|
||||||||| | ||| |||| ||||||||| |||| | ||||||||||||| |||||||||| || ||| ||| ||| |||||||||| |
|
|
| T |
44129120 |
gttctttgaaacaatcccaggaacatctttaagaaggtgaaatgttagtccagcttcacgaaggtgaccatcaatggctccttcactatc |
44129031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 16 - 305
Target Start/End: Complemental strand, 44133525 - 44133236
Alignment:
| Q |
16 |
ataaacaatacacaagtacttgacatgttaccatattcactaagtacttccctagtggccgtcatcttttccggtttcaaagctaacttttgttcaacat |
115 |
Q |
| |
|
|||||||| ||||| | ||||||||| || |||||||||||||| ||||| || ||||| |||||||||| ||||| || ||||||||||| ||||| | |
|
|
| T |
44133525 |
ataaacaaaacacaggcacttgacatatttccatattcactaagcacttctctggtggctttcatcttttcaggttttaaggctaacttttgctcaactt |
44133426 |
T |
|
| Q |
116 |
ggtccaaaattgcaggtccacctgggtggacaatccaaaaaattgcattgtaatcagagatgcctaatggttggaatgccttaactagttctttatcgat |
215 |
Q |
| |
|
| || | ||||||||||||||| ||||| |||||||||| |||| |||||||||||| || |||||||||| ||| |||| ||| | | |||||| ||| |
|
|
| T |
44133425 |
gatctagaattgcaggtccaccagggtgtgcaatccaaaagattgaattgtaatcagaaattcctaatggttcgaaagcctcaaccaatgctttattgat |
44133326 |
T |
|
| Q |
216 |
gttctttgagataatttcagggacatctttacgaagattaaatgttagtccaacttcacgaagttggccactaattgcttcttcactatc |
305 |
Q |
| |
|
||||||||| | ||| |||| ||||||||| |||| | ||||||||||||| |||||||||| || ||| ||| ||| |||||||||| |
|
|
| T |
44133325 |
gttctttgaaacaatcccaggaacatctttaagaaggtgaaatgttagtccagcttcacgaaggtgaccatcaatggctccttcactatc |
44133236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 16 - 278
Target Start/End: Complemental strand, 44141947 - 44141685
Alignment:
| Q |
16 |
ataaacaatacacaagtacttgacatgttaccatattcactaagtacttccctagtggccgtcatcttttccggtttcaaagctaacttttgttcaacat |
115 |
Q |
| |
|
|||||||| ||||| | ||||||||| || |||||||||||||| ||||| || ||||| |||||||||| ||||| || ||||||||||| ||||| | |
|
|
| T |
44141947 |
ataaacaaaacacaggcacttgacatatttccatattcactaagcacttctctggtggctttcatcttttcaggttttaaggctaacttttgctcaactt |
44141848 |
T |
|
| Q |
116 |
ggtccaaaattgcaggtccacctgggtggacaatccaaaaaattgcattgtaatcagagatgcctaatggttggaatgccttaactagttctttatcgat |
215 |
Q |
| |
|
| || | ||||||||||||||| ||||| |||||||||| |||| |||||||||||| || |||||||||| ||| |||| ||| | | |||||| ||| |
|
|
| T |
44141847 |
gatctagaattgcaggtccaccagggtgtgcaatccaaaagattgaattgtaatcagaaattcctaatggttcgaaagcctcaaccaatgctttattgat |
44141748 |
T |
|
| Q |
216 |
gttctttgagataatttcagggacatctttacgaagattaaatgttagtccaacttcacgaag |
278 |
Q |
| |
|
||||||||| | ||| |||| ||||||||| |||| | ||||||||||||| |||||||||| |
|
|
| T |
44141747 |
gttctttgaaacaatcccaggaacatctttaagaaggtgaaatgttagtccagcttcacgaag |
44141685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 99; Significance: 8e-49; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 22 - 304
Target Start/End: Original strand, 24163172 - 24163454
Alignment:
| Q |
22 |
aatacacaagtacttgacatgttaccatattcactaagtacttccctagtggccgtcatcttttccggtttcaaagctaacttttgttcaacatggtcca |
121 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||||| | || |||||||| |||||||||| |||||||| |||||||||| |||| | ||| | |
|
|
| T |
24163172 |
aatacacatgcacttgacatgttaccatattcactaagcatttttctagtggcactcatcttttcaggtttcaaggctaacttttcctcaattttgtcta |
24163271 |
T |
|
| Q |
122 |
aaattgcaggtccacctgggtggacaatccaaaaaattgcattgtaatcagagatgcctaatggttggaatgccttaactagttctttatcgatgttctt |
221 |
Q |
| |
|
|||||| |||||||| | ||| |||||||||| |||| |||||||||||||| ||||||||||||||||||| || | | ||||||| || ||||| |
|
|
| T |
24163272 |
gaattgcgggtccaccagagtgagcaatccaaaagattgagttgtaatcagagatacctaatggttggaatgcctcaaacaatgctttatcaatattctt |
24163371 |
T |
|
| Q |
222 |
tgagataatttcagggacatctttacgaagattaaatgttagtccaacttcacgaagttggccactaattgcttcttcactat |
304 |
Q |
| |
|
||||| ||| || || ||||| |||| ||||| ||||| ||| |||| ||||||||||||||||| ||| ||| ||||||||| |
|
|
| T |
24163372 |
tgagacaatgtctggaacatccttacaaagatgaaatgatagcccaaattcacgaagttggccacaaatagctccttcactat |
24163454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 7e-46; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 16 - 305
Target Start/End: Original strand, 46706364 - 46706653
Alignment:
| Q |
16 |
ataaacaatacacaagtacttgacatgttaccatattcactaagtacttccctagtggccgtcatcttttccggtttcaaagctaacttttgttcaacat |
115 |
Q |
| |
|
|||||||| ||||| | ||||||||| || |||||||||||||| ||||| |||||||| |||||||||| || ||||| ||||||||||| || || | |
|
|
| T |
46706364 |
ataaacaaaacacatgcacttgacatatttccatattcactaagcacttctctagtggctctcatcttttcaggcttcaaggctaacttttgctctactt |
46706463 |
T |
|
| Q |
116 |
ggtccaaaattgcaggtccacctgggtggacaatccaaaaaattgcattgtaatcagagatgcctaatggttggaatgccttaactagttctttatcgat |
215 |
Q |
| |
|
| || ||||||||||| ||||| ||||| |||||||||| |||| ||||||||||| || || ||||||||||| |||| ||||| | ||||||| || |
|
|
| T |
46706464 |
gatctaaaattgcagggccaccagggtgtgcaatccaaaagattgagttgtaatcagaaattcccaatggttggaaagcctcaactaatgctttatcaat |
46706563 |
T |
|
| Q |
216 |
gttctttgagataatttcagggacatctttacgaagattaaatgttagtccaacttcacgaagttggccactaattgcttcttcactatc |
305 |
Q |
| |
|
||||||||| | ||| |||| |||||||| |||| | |||||||||||| |||||||||| || ||| ||| ||| |||||||||| |
|
|
| T |
46706564 |
gttctttgaaacaatcccaggaacatcttttagaaggtggaatgttagtccagcttcacgaaggtgaccatcaatggctccttcactatc |
46706653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 16 - 305
Target Start/End: Original strand, 5289073 - 5289362
Alignment:
| Q |
16 |
ataaacaatacacaagtacttgacatgttaccatattcactaagtacttccctagtggccgtcatcttttccggtttcaaagctaacttttgttcaacat |
115 |
Q |
| |
|
|||||||| ||||| | ||||||||| || ||||||||||| || ||||| ||||| || |||||||||| || || || ||||||||||| || || | |
|
|
| T |
5289073 |
ataaacaaaacacatgcacttgacatatttccatattcactgagcacttctctagttgcattcatcttttcaggctttaaggctaacttttgctccactt |
5289172 |
T |
|
| Q |
116 |
ggtccaaaattgcaggtccacctgggtggacaatccaaaaaattgcattgtaatcagagatgcctaatggttggaatgccttaactagttctttatcgat |
215 |
Q |
| |
|
| || | ||||||||||||||| || || |||||||||| |||| ||||||||||| || || ||||| | ||| |||| ||| | | ||||| ||| |
|
|
| T |
5289173 |
gatctagaattgcaggtccaccgggatgtgcaatccaaaagattgagttgtaatcagaaattcccaatggctcgaaagcctcaaccaatgctttagtgat |
5289272 |
T |
|
| Q |
216 |
gttctttgagataatttcagggacatctttacgaagattaaatgttagtccaacttcacgaagttggccactaattgcttcttcactatc |
305 |
Q |
| |
|
||||||||| | ||| |||| ||||||||| |||| | ||||||||||||| |||||||||| |||||| ||| ||| |||||||||| |
|
|
| T |
5289273 |
gttctttgaaacaatcccaggaacatctttaagaaggtgaaatgttagtccagcttcacgaaggtggccatcaatggctccttcactatc |
5289362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 16 - 311
Target Start/End: Complemental strand, 5311143 - 5310848
Alignment:
| Q |
16 |
ataaacaatacacaagtacttgacatgttaccatattcactaagtacttccctagtggccgtcatcttttccggtttcaaagctaacttttgttcaacat |
115 |
Q |
| |
|
|||||||| ||||| | ||||||||| || ||||||||||| || ||||| ||||| || |||||||||| || || || ||||||||||| || || | |
|
|
| T |
5311143 |
ataaacaaaacacatgcacttgacatatttccatattcactgagcacttctctagttgcattcatcttttcaggctttaaggctaacttttgctctactt |
5311044 |
T |
|
| Q |
116 |
ggtccaaaattgcaggtccacctgggtggacaatccaaaaaattgcattgtaatcagagatgcctaatggttggaatgccttaactagttctttatcgat |
215 |
Q |
| |
|
| || | ||||||||||||||| || || |||||||||| |||| ||||||||||| || || ||||| | ||| |||| ||| | | ||||| || |
|
|
| T |
5311043 |
gatctagaattgcaggtccaccgggatgtgcaatccaaaagattgagttgtaatcagaaattcccaatggctcgaaagcctcaaccaatgctttagtaat |
5310944 |
T |
|
| Q |
216 |
gttctttgagataatttcagggacatctttacgaagattaaatgttagtccaacttcacgaagttggccactaattgcttcttcactatcaagagc |
311 |
Q |
| |
|
||||||||||| ||| |||| ||||||||| |||| | ||||||||||||| |||||||||| || ||| ||| ||| ||||||||||| |||| |
|
|
| T |
5310943 |
gttctttgagacaatcccaggaacatctttaagaaggtgaaatgttagtccagcttcacgaaggtgaccatcaatggctccttcactatcaggagc |
5310848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 311
Target Start/End: Complemental strand, 5315857 - 5315562
Alignment:
| Q |
16 |
ataaacaatacacaagtacttgacatgttaccatattcactaagtacttccctagtggccgtcatcttttccggtttcaaagctaacttttgttcaacat |
115 |
Q |
| |
|
|||||||| ||||| | ||||||||| || ||||||||||| || ||||| ||||| || |||||||||| || || || ||||||||||| || || | |
|
|
| T |
5315857 |
ataaacaaaacacacgcacttgacatatttccatattcactgagcacttctctagttgcattcatcttttcaggctttaaggctaacttttgctccactt |
5315758 |
T |
|
| Q |
116 |
ggtccaaaattgcaggtccacctgggtggacaatccaaaaaattgcattgtaatcagagatgcctaatggttggaatgccttaactagttctttatcgat |
215 |
Q |
| |
|
| || | ||||||||||||||| || || |||||||||| |||| ||||||||||| || || ||||| | ||| |||| ||| | | ||||| || |
|
|
| T |
5315757 |
gatctagaattgcaggtccaccgggatgtgcaatccaaaagattgagttgtaatcagaaattcccaatggctcgaaagcctcaaccaatgctttagtaat |
5315658 |
T |
|
| Q |
216 |
gttctttgagataatttcagggacatctttacgaagattaaatgttagtccaacttcacgaagttggccactaattgcttcttcactatcaagagc |
311 |
Q |
| |
|
||||||||| | ||| |||| ||||||||| |||| | ||||||||||||| |||||||||| || ||| ||| ||| ||||||||||| |||| |
|
|
| T |
5315657 |
gttctttgaaacaatcccaggaacatctttaagaaggtgaaatgttagtccagcttcacgaaggtgaccatcaatggctccttcactatcaggagc |
5315562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 16 - 311
Target Start/End: Complemental strand, 5285054 - 5284759
Alignment:
| Q |
16 |
ataaacaatacacaagtacttgacatgttaccatattcactaagtacttccctagtggccgtcatcttttccggtttcaaagctaacttttgttcaacat |
115 |
Q |
| |
|
|||||||| ||||| | ||||||||| || ||||||||||| || ||||| || || || |||||||||| || ||||| ||||||||||| || || | |
|
|
| T |
5285054 |
ataaacaaaacacatgcacttgacatatttccatattcactgagcacttctctggttgcattcatcttttcaggcttcaaggctaacttttgctctactt |
5284955 |
T |
|
| Q |
116 |
ggtccaaaattgcaggtccacctgggtggacaatccaaaaaattgcattgtaatcagagatgcctaatggttggaatgccttaactagttctttatcgat |
215 |
Q |
| |
|
| || | ||||||||||||||| || || |||||||||| |||| ||||||||||| || || ||||| | || |||| ||| | | ||||| || |
|
|
| T |
5284954 |
gatctagaattgcaggtccaccgggatgtgcaatccaaaagattgagttgtaatcagaaattcccaatggctcaaaagcctcaaccaatgctttagtaat |
5284855 |
T |
|
| Q |
216 |
gttctttgagataatttcagggacatctttacgaagattaaatgttagtccaacttcacgaagttggccactaattgcttcttcactatcaagagc |
311 |
Q |
| |
|
||||||||| | ||| |||| ||||||||| |||| | ||||||||||||| |||||||||| || ||| ||| ||| ||||||||||| |||| |
|
|
| T |
5284854 |
gttctttgaaacaatcccaggaacatctttaagaaggtgaaatgttagtccagcttcacgaaggtgaccatcaatggctccttcactatcaggagc |
5284759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 311
Target Start/End: Complemental strand, 5303242 - 5302947
Alignment:
| Q |
16 |
ataaacaatacacaagtacttgacatgttaccatattcactaagtacttccctagtggccgtcatcttttccggtttcaaagctaacttttgttcaacat |
115 |
Q |
| |
|
|||||||| ||||| | ||||||||| || ||||||||||| || ||||| ||||| || |||||||||| || ||||| | ||||||||| || || | |
|
|
| T |
5303242 |
ataaacaaaacacatgcacttgacatatttccatattcactgagcacttctctagttgcattcatcttttcaggcttcaatgataacttttgctctactt |
5303143 |
T |
|
| Q |
116 |
ggtccaaaattgcaggtccacctgggtggacaatccaaaaaattgcattgtaatcagagatgcctaatggttggaatgccttaactagttctttatcgat |
215 |
Q |
| |
|
| || | ||||||||||||||| || || |||||||||| |||| ||||||||||| || || | ||| | || || | ||| | | ||||| || |
|
|
| T |
5303142 |
gatctagaattgcaggtccaccgggatgtgcaatccaaaagattgagttgtaatcagaaattcccagtggctcaaaagcgtcaaccaatgctttagtaat |
5303043 |
T |
|
| Q |
216 |
gttctttgagataatttcagggacatctttacgaagattaaatgttagtccaacttcacgaagttggccactaattgcttcttcactatcaagagc |
311 |
Q |
| |
|
||||||||| | ||| |||| ||||||||| |||| | ||||||||||||| |||||||||| || ||| ||| ||| ||||||||||| |||| |
|
|
| T |
5303042 |
gttctttgaaacaatcccaggaacatctttaagaaggtgaaatgttagtccagcttcacgaaggtgaccatcaatggctccttcactatcaggagc |
5302947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 229
Target Start/End: Original strand, 37858839 - 37858953
Alignment:
| Q |
115 |
tggtccaaaattgcaggtccacctgggtggacaatccaaaaaattgcattgtaatcagagatgcctaatggttggaatgccttaactagttctttatcga |
214 |
Q |
| |
|
||||||| |||||| |||||||| ||||| | |||||||| || | ||||||||||||||| ||||| ||||| || |||| | | || |||| || | |
|
|
| T |
37858839 |
tggtccagaattgctggtccaccagggtgtgcgatccaaaagatggaattgtaatcagagatacctaaaggttgaaaggcctcagcaagagctttctcaa |
37858938 |
T |
|
| Q |
215 |
tgttctttgagataa |
229 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
37858939 |
tgttctttgagataa |
37858953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 176
Target Start/End: Complemental strand, 39030800 - 39030657
Alignment:
| Q |
33 |
acttgacatgttaccatattcactaagtacttccctagtggccgtcatcttttccggtttcaaagctaacttttgttcaacatggtccaaaattgcaggt |
132 |
Q |
| |
|
|||||||||||||||||| ||||||||||| | || |||||| ||| || || || || || |||| || |||||| ||||| | |||||| || |
|
|
| T |
39030800 |
acttgacatgttaccatactcactaagtacatgccgagtggcttgcattttctctggctttaagcctaatttggcttcaacttggtcaagaattgctcgt |
39030701 |
T |
|
| Q |
133 |
ccacctgggtggacaatccaaaaaattgcattgtaatcagagat |
176 |
Q |
| |
|
|| |||||||| ||||||||||||||| ||||||||| ||||| |
|
|
| T |
39030700 |
ccgcctgggtgtgcaatccaaaaaattgaattgtaatcggagat |
39030657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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