View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1922_high_1 (Length: 453)

Name: NF1922_high_1
Description: NF1922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1922_high_1
NF1922_high_1
[»] chr4 (20 HSPs)
chr4 (11-447)||(34646774-34647212)
chr4 (408-447)||(41707589-41707628)
chr4 (406-444)||(36572009-36572047)
chr4 (406-443)||(39404388-39404425)
chr4 (406-447)||(52884877-52884918)
chr4 (404-447)||(25483324-25483367)
chr4 (409-447)||(2740693-2740731)
chr4 (405-447)||(19504694-19504736)
chr4 (409-447)||(36629230-36629268)
chr4 (409-443)||(39792989-39793023)
chr4 (409-447)||(52884688-52884726)
chr4 (406-447)||(3341118-3341159)
chr4 (406-447)||(10245910-10245951)
chr4 (418-447)||(16888941-16888970)
chr4 (406-447)||(22028086-22028127)
chr4 (406-447)||(22183389-22183430)
chr4 (406-447)||(36608786-36608827)
chr4 (418-447)||(44620662-44620691)
chr4 (406-447)||(45489456-45489497)
chr4 (406-447)||(50002416-50002457)
[»] chr1 (24 HSPs)
chr1 (406-447)||(34649428-34649469)
chr1 (406-447)||(37556101-37556142)
chr1 (403-447)||(45839614-45839658)
chr1 (408-447)||(17294569-17294608)
chr1 (406-445)||(26661651-26661690)
chr1 (408-447)||(5320092-5320131)
chr1 (406-445)||(11977270-11977309)
chr1 (404-447)||(29798187-29798230)
chr1 (409-447)||(22077249-22077287)
chr1 (406-444)||(37850730-37850768)
chr1 (405-447)||(41184552-41184594)
chr1 (418-447)||(3537274-3537303)
chr1 (406-447)||(34364497-34364538)
chr1 (406-447)||(34364915-34364956)
chr1 (406-443)||(35154170-35154207)
chr1 (418-447)||(41142374-41142403)
chr1 (418-447)||(44290585-44290614)
chr1 (418-447)||(44290952-44290981)
chr1 (418-447)||(50051778-50051807)
chr1 (403-447)||(21378168-21378212)
chr1 (119-187)||(32973451-32973519)
chr1 (407-447)||(37555721-37555761)
chr1 (408-444)||(38804485-38804521)
chr1 (419-447)||(50052150-50052178)
[»] chr8 (15 HSPs)
chr8 (404-447)||(3038417-3038460)
chr8 (405-447)||(25561943-25561985)
chr8 (402-447)||(30359257-30359302)
chr8 (406-447)||(8794101-8794142)
chr8 (406-447)||(9309345-9309386)
chr8 (406-447)||(34834866-34834907)
chr8 (409-447)||(41972151-41972189)
chr8 (406-443)||(147819-147856)
chr8 (418-447)||(3670062-3670091)
chr8 (418-447)||(6731906-6731935)
chr8 (406-443)||(30359599-30359636)
chr8 (406-447)||(33113494-33113535)
chr8 (418-447)||(45123008-45123037)
chr8 (419-447)||(147454-147482)
chr8 (419-447)||(18372498-18372526)
[»] chr3 (29 HSPs)
chr3 (405-447)||(52634665-52634707)
chr3 (406-447)||(32463028-32463069)
chr3 (406-447)||(45901703-45901744)
chr3 (406-444)||(32462689-32462727)
chr3 (409-447)||(35946515-35946553)
chr3 (406-447)||(11661525-11661566)
chr3 (406-443)||(22304079-22304116)
chr3 (406-447)||(25739552-25739593)
chr3 (406-447)||(37990766-37990807)
chr3 (406-443)||(43346922-43346959)
chr3 (408-447)||(12747879-12747918)
chr3 (354-405)||(15673668-15673719)
chr3 (405-447)||(1634442-1634484)
chr3 (406-440)||(3135595-3135629)
chr3 (409-447)||(8327897-8327935)
chr3 (406-444)||(15773182-15773220)
chr3 (418-448)||(29644707-29644737)
chr3 (405-447)||(29645029-29645071)
chr3 (405-447)||(49336814-49336856)
chr3 (405-447)||(53577353-53577395)
chr3 (418-447)||(22304248-22304277)
chr3 (406-443)||(25755384-25755421)
chr3 (406-447)||(31190007-31190048)
chr3 (406-447)||(37991104-37991145)
chr3 (418-447)||(39336356-39336385)
chr3 (402-443)||(39914238-39914279)
chr3 (406-443)||(42342519-42342556)
chr3 (406-447)||(43346640-43346681)
chr3 (418-447)||(50612579-50612608)
[»] chr7 (22 HSPs)
chr7 (406-447)||(30244260-30244301)
chr7 (406-447)||(1085743-1085784)
chr7 (406-447)||(7517570-7517611)
chr7 (406-447)||(7554015-7554056)
chr7 (406-447)||(16569186-16569227)
chr7 (406-447)||(16596435-16596476)
chr7 (406-447)||(22566789-22566830)
chr7 (406-447)||(30245067-30245108)
chr7 (406-447)||(36967356-36967397)
chr7 (406-447)||(45434626-45434667)
chr7 (405-447)||(20599303-20599345)
chr7 (405-447)||(34218161-34218203)
chr7 (405-447)||(43241484-43241526)
chr7 (405-447)||(45754705-45754746)
chr7 (406-447)||(24177425-24177466)
chr7 (406-447)||(30244691-30244732)
chr7 (406-443)||(30245484-30245521)
chr7 (406-447)||(30255329-30255370)
chr7 (418-447)||(36622962-36622991)
chr7 (406-447)||(41910721-41910762)
chr7 (406-447)||(45433231-45433272)
chr7 (406-447)||(47129085-47129126)
[»] chr5 (19 HSPs)
chr5 (406-447)||(26074909-26074950)
chr5 (404-447)||(12662779-12662822)
chr5 (409-447)||(1028644-1028682)
chr5 (405-447)||(36492344-36492386)
chr5 (406-447)||(6224186-6224227)
chr5 (406-447)||(42405723-42405764)
chr5 (405-444)||(15370088-15370127)
chr5 (408-443)||(36527214-36527249)
chr5 (409-447)||(13415887-13415925)
chr5 (405-447)||(26075289-26075331)
chr5 (406-444)||(35150737-35150775)
chr5 (406-444)||(35151028-35151066)
chr5 (409-447)||(36568694-36568732)
chr5 (409-447)||(39309677-39309715)
chr5 (418-447)||(299491-299520)
chr5 (418-447)||(5723918-5723947)
chr5 (418-447)||(32487396-32487425)
chr5 (418-447)||(35150009-35150038)
chr5 (418-447)||(40296442-40296471)
[»] chr2 (20 HSPs)
chr2 (406-447)||(6712966-6713007)
chr2 (405-444)||(36006009-36006048)
chr2 (400-443)||(38796751-38796794)
chr2 (409-447)||(962591-962629)
chr2 (406-447)||(6421294-6421335)
chr2 (406-447)||(6421375-6421416)
chr2 (406-447)||(15880253-15880294)
chr2 (406-447)||(31468873-31468914)
chr2 (406-447)||(36785690-36785731)
chr2 (406-447)||(38796345-38796386)
chr2 (409-447)||(28531441-28531479)
chr2 (406-444)||(40733873-40733911)
chr2 (406-447)||(3673075-3673116)
chr2 (406-447)||(16542439-16542480)
chr2 (406-447)||(29676893-29676934)
chr2 (418-447)||(35580850-35580879)
chr2 (418-447)||(36178732-36178761)
chr2 (418-447)||(37106190-37106219)
chr2 (406-443)||(40733507-40733544)
chr2 (407-443)||(12529159-12529195)
[»] chr6 (14 HSPs)
chr6 (404-447)||(2579999-2580042)
chr6 (406-447)||(2579232-2579273)
chr6 (405-445)||(2377743-2377783)
chr6 (406-441)||(2578575-2578610)
chr6 (405-447)||(16107667-16107709)
chr6 (406-447)||(1950312-1950353)
chr6 (418-447)||(2378128-2378157)
chr6 (418-447)||(14748465-14748494)
chr6 (406-443)||(16108053-16108090)
chr6 (406-443)||(16454565-16454602)
chr6 (418-447)||(26544051-26544080)
chr6 (418-447)||(29518505-29518534)
chr6 (418-447)||(29518922-29518951)
chr6 (418-447)||(32741181-32741210)
[»] scaffold0391 (2 HSPs)
scaffold0391 (406-447)||(1233-1274)
scaffold0391 (406-447)||(3112-3153)
[»] scaffold0702 (2 HSPs)
scaffold0702 (405-445)||(643-683)
scaffold0702 (418-447)||(269-298)
[»] scaffold0113 (1 HSPs)
scaffold0113 (408-447)||(39830-39869)
[»] scaffold0734 (2 HSPs)
scaffold0734 (405-447)||(5385-5427)
scaffold0734 (406-447)||(5767-5808)
[»] scaffold0504 (1 HSPs)
scaffold0504 (406-447)||(10238-10279)


Alignment Details
Target: chr4 (Bit Score: 408; Significance: 0; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 11 - 447
Target Start/End: Complemental strand, 34647212 - 34646774
Alignment:
Q  11 ataatattgcgattgaaggtgtcttccttaatgcgattgaaggagcccttgttgaacttctctagatgtttcttccactccatgcttattgtggtgtatt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34647212 ataatattgcgattgaaggtgtcttccttaatgcgattgaaggagcccttgttgaacttctctagatgtttcttccactccatgcttattgtggtgtatt 34647113  T
Q  111 ttccaacacacacatcttgttagaaatctattagataaatagacaactcacgtcacaacttcagtccaaaattctttattgggttcttacttttgatctt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34647112 ttccaacacacacatcttgttagaaatctattagataaatagacaacacacgtcacaacttcagtccaaaattctttattgggttcttacttttgatctt 34647013  T
Q  211 actttgaattatttattttttctttccacggcgtcattttattaaaggaaccttagaattgtaattaatggacatttgattccc--ttattcacataact 308  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  34647012 actttgaattatttattttttctttccacggcatcattttattaaaggaaccttagaattgtaattaatggacatttgattcccttttattcacataact 34646913  T
Q  309 cttagaactcattagaagtgaacttacctactcgattcgttcacgtagcttttatccatcgaccattttctttctccacataagcttttaacttctttgt 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  34646912 cttagaactcattagaagtgaacttacctactcgattcgttcacgtagcttttatccatcgaccattttctttctccacaaaagcttttaacttatttgt 34646813  T
Q  409 tgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  34646812 tgttgtgtacaagtgtgagttatatgtcccacatcggat 34646774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 408 - 447
Target Start/End: Complemental strand, 41707628 - 41707589
Alignment:
Q  408 ttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  41707628 ttgttgtgtacaagtgtgagttatatgtcccacatcggat 41707589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 406 - 444
Target Start/End: Original strand, 36572009 - 36572047
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatcg 444  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  36572009 tgttgttgtgtacaagtgtgagttatatgtcccacatcg 36572047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 406 - 443
Target Start/End: Original strand, 39404388 - 39404425
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatc 443  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  39404388 tgttgttgtgtacaagtgtgagttatatgtcccacatc 39404425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 406 - 447
Target Start/End: Original strand, 52884877 - 52884918
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||| | ||||||||||||||||||||||||||||||    
T  52884877 tgttgttgtgtgcaagtgtgagttatatgtcccacatcggat 52884918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 447
Target Start/End: Original strand, 25483324 - 25483367
Alignment:
Q  404 tttgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||||| | ||||||||||||||||||| ||||||||||    
T  25483324 tttgttgttgtgtgcaagtgtgagttatatgtctcacatcggat 25483367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 409 - 447
Target Start/End: Original strand, 2740693 - 2740731
Alignment:
Q  409 tgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    |||||| | ||||||||||||||||||||||||||||||    
T  2740693 tgttgtgtgcaagtgtgagttatatgtcccacatcggat 2740731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 405 - 447
Target Start/End: Original strand, 19504694 - 19504736
Alignment:
Q  405 ttgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    |||||||||| ||||||| |||||||||||||||| |||||||    
T  19504694 ttgttgttgtgtacaagtatgagttatatgtcccatatcggat 19504736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 409 - 447
Target Start/End: Original strand, 36629230 - 36629268
Alignment:
Q  409 tgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    |||||| | ||||||||||||||||||||||||||||||    
T  36629230 tgttgtgttcaagtgtgagttatatgtcccacatcggat 36629268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 409 - 443
Target Start/End: Complemental strand, 39793023 - 39792989
Alignment:
Q  409 tgttgtatacaagtgtgagttatatgtcccacatc 443  Q
    |||||| ||||||||||||||||||||||||||||    
T  39793023 tgttgtgtacaagtgtgagttatatgtcccacatc 39792989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 409 - 447
Target Start/End: Original strand, 52884688 - 52884726
Alignment:
Q  409 tgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    |||||| | ||||||||||||||||||||||||||||||    
T  52884688 tgttgtgtgcaagtgtgagttatatgtcccacatcggat 52884726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 447
Target Start/End: Original strand, 3341118 - 3341159
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||| | ||||||||||||||||||||||||| ||||    
T  3341118 tgttgttgtgtgcaagtgtgagttatatgtcccacattggat 3341159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 447
Target Start/End: Original strand, 10245910 - 10245951
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||| | ||||||||||||||||| ||||||||||||    
T  10245910 tgttgttgtgtgcaagtgtgagttatatgccccacatcggat 10245951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 447
Target Start/End: Complemental strand, 16888970 - 16888941
Alignment:
Q  418 caagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||||||||||||||||||||||||    
T  16888970 caagtgtgagttatatgtcccacatcggat 16888941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 447
Target Start/End: Complemental strand, 22028127 - 22028086
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||| | ||||||||| ||||||||||||||||||||    
T  22028127 tgttgttgtgtgcaagtgtgacttatatgtcccacatcggat 22028086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 447
Target Start/End: Complemental strand, 22183430 - 22183389
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||| | |||||||||||||||| |||||||||||||    
T  22183430 tgttgttgtgtgcaagtgtgagttatatatcccacatcggat 22183389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 447
Target Start/End: Complemental strand, 36608827 - 36608786
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||| | |||||||||||||||||||| |||||||||    
T  36608827 tgttgttgtgtgcaagtgtgagttatatgtccaacatcggat 36608786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 447
Target Start/End: Original strand, 44620662 - 44620691
Alignment:
Q  418 caagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||||||||||||||||||||||||    
T  44620662 caagtgtgagttatatgtcccacatcggat 44620691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 447
Target Start/End: Complemental strand, 45489497 - 45489456
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||| ||||||||||| ||||||||| ||||||||||    
T  45489497 tgttgttgtgtacaagtgtgaattatatgtctcacatcggat 45489456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 447
Target Start/End: Original strand, 50002416 - 50002457
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||| | ||||||||||||||||||| ||||||||||    
T  50002416 tgttgttgtttgcaagtgtgagttatatgtctcacatcggat 50002457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 406 - 447
Target Start/End: Original strand, 34649428 - 34649469
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  34649428 tgttgttgtatacaagtgtgagttatatgtcccacatcggat 34649469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 406 - 447
Target Start/End: Original strand, 37556101 - 37556142
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  37556101 tgttgttgtgtacaagtgtgagttatatgtcccacatcggat 37556142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 403 - 447
Target Start/End: Original strand, 45839614 - 45839658
Alignment:
Q  403 ctttgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||    
T  45839614 ctttgttgttgtgtacaagtatgagttatatgtcccacatcggat 45839658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 408 - 447
Target Start/End: Original strand, 17294569 - 17294608
Alignment:
Q  408 ttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  17294569 ttgttgtgtacaagtgtgagttatatgtcccacatcggat 17294608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 406 - 445
Target Start/End: Complemental strand, 26661690 - 26661651
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatcgg 445  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  26661690 tgttgttgtgtacaagtgtgagttatatgtcccacatcgg 26661651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 408 - 447
Target Start/End: Complemental strand, 5320131 - 5320092
Alignment:
Q  408 ttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||| |||||||||||||||||| |||||||||||    
T  5320131 ttgttgtatgcaagtgtgagttatatgttccacatcggat 5320092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 445
Target Start/End: Original strand, 11977270 - 11977309
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatcgg 445  Q
    ||||| ||| ||||||||||||||||||||||||||||||    
T  11977270 tgttgctgtgtacaagtgtgagttatatgtcccacatcgg 11977309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 447
Target Start/End: Original strand, 29798187 - 29798230
Alignment:
Q  404 tttgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||||||| |||||||||||||||||||| |||| ||||    
T  29798187 tttgttgttgtatgcaagtgtgagttatatgtcctacattggat 29798230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 409 - 447
Target Start/End: Complemental strand, 22077287 - 22077249
Alignment:
Q  409 tgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    |||||| | ||||||||||||||||||||||||||||||    
T  22077287 tgttgtgtgcaagtgtgagttatatgtcccacatcggat 22077249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 406 - 444
Target Start/End: Complemental strand, 37850768 - 37850730
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatcg 444  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  37850768 tgttgttgtgtgcaagtgtgagttatatgtcccacatcg 37850730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 405 - 447
Target Start/End: Complemental strand, 41184594 - 41184552
Alignment:
Q  405 ttgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    |||||||||| | ||||||||||||||||||| ||||||||||    
T  41184594 ttgttgttgtgtgcaagtgtgagttatatgtctcacatcggat 41184552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 447
Target Start/End: Complemental strand, 3537303 - 3537274
Alignment:
Q  418 caagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||||||||||||||||||||||||    
T  3537303 caagtgtgagttatatgtcccacatcggat 3537274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 447
Target Start/End: Original strand, 34364497 - 34364538
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||| | ||||||||||||||||||| ||||||||||    
T  34364497 tgttgttgtgtgcaagtgtgagttatatgtctcacatcggat 34364538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 447
Target Start/End: Original strand, 34364915 - 34364956
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||| | ||||||||||||||||||| ||||||||||    
T  34364915 tgttgttgtgtgcaagtgtgagttatatgtcacacatcggat 34364956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 443
Target Start/End: Complemental strand, 35154207 - 35154170
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatc 443  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  35154207 tgttgttgtgtgcaagtgtgagttatatgtcccacatc 35154170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 447
Target Start/End: Original strand, 41142374 - 41142403
Alignment:
Q  418 caagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||||||||||||||||||||||||    
T  41142374 caagtgtgagttatatgtcccacatcggat 41142403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 447
Target Start/End: Complemental strand, 44290614 - 44290585
Alignment:
Q  418 caagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||||||||||||||||||||||||    
T  44290614 caagtgtgagttatatgtcccacatcggat 44290585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 447
Target Start/End: Complemental strand, 44290981 - 44290952
Alignment:
Q  418 caagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||||||||||||||||||||||||    
T  44290981 caagtgtgagttatatgtcccacatcggat 44290952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 447
Target Start/End: Complemental strand, 50051807 - 50051778
Alignment:
Q  418 caagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||||||||||||||||||||||||    
T  50051807 caagtgtgagttatatgtcccacatcggat 50051778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 447
Target Start/End: Complemental strand, 21378212 - 21378168
Alignment:
Q  403 ctttgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    |||||||||||| | ||||||| |||||||||||||| |||||||    
T  21378212 ctttgttgttgtgtgcaagtgtcagttatatgtcccagatcggat 21378168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 187
Target Start/End: Complemental strand, 32973519 - 32973451
Alignment:
Q  119 cacacatcttgttagaaatctattagataaatagacaactcacgtcacaacttcagtccaaaattcttt 187  Q
    ||||| ||||||| || |||||||||||| ||||||  | || ||||||||||||  ||||||||||||    
T  32973519 cacacttcttgttggagatctattagatagatagactgcacatgtcacaacttcaacccaaaattcttt 32973451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 407 - 447
Target Start/End: Original strand, 37555721 - 37555761
Alignment:
Q  407 gttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    |||||||| || |||||||||||||| ||||||||||||||    
T  37555721 gttgttgtgtaaaagtgtgagttataagtcccacatcggat 37555761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 408 - 444
Target Start/End: Complemental strand, 38804521 - 38804485
Alignment:
Q  408 ttgttgtatacaagtgtgagttatatgtcccacatcg 444  Q
    ||||||| ||||||||||||||||| |||||||||||    
T  38804521 ttgttgtttacaagtgtgagttatacgtcccacatcg 38804485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 419 - 447
Target Start/End: Complemental strand, 50052178 - 50052150
Alignment:
Q  419 aagtgtgagttatatgtcccacatcggat 447  Q
    |||||||||||||||||||||||||||||    
T  50052178 aagtgtgagttatatgtcccacatcggat 50052150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 404 - 447
Target Start/End: Complemental strand, 3038460 - 3038417
Alignment:
Q  404 tttgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||||| ||||||||||||||||||||||||||||||||    
T  3038460 tttgttgttgtgtacaagtgtgagttatatgtcccacatcggat 3038417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 405 - 447
Target Start/End: Complemental strand, 25561985 - 25561943
Alignment:
Q  405 ttgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  25561985 ttgttgttgtctacaagtgtgagttatatgtcccacatcggat 25561943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 402 - 447
Target Start/End: Original strand, 30359257 - 30359302
Alignment:
Q  402 tctttgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||    
T  30359257 tctttgttgttgtgtacaagtgtgagttatatgtctcacatcggat 30359302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 406 - 447
Target Start/End: Original strand, 8794101 - 8794142
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||| ||||||||||||||||||||| ||||||||||    
T  8794101 tgttgttgtgtacaagtgtgagttatatgtctcacatcggat 8794142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 406 - 447
Target Start/End: Original strand, 9309345 - 9309386
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||| | ||||||||||||||||||||||||||||||    
T  9309345 tgttgttgtgtgcaagtgtgagttatatgtcccacatcggat 9309386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 406 - 447
Target Start/End: Original strand, 34834866 - 34834907
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||| ||||||||||||||||||||||||||| ||||    
T  34834866 tgttgttgtgtacaagtgtgagttatatgtcccacattggat 34834907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 409 - 447
Target Start/End: Original strand, 41972151 - 41972189
Alignment:
Q  409 tgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    |||||| | ||||||||||||||||||||||||||||||    
T  41972151 tgttgtgtgcaagtgtgagttatatgtcccacatcggat 41972189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 443
Target Start/End: Original strand, 147819 - 147856
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatc 443  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  147819 tgttgttgtgtgcaagtgtgagttatatgtcccacatc 147856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 447
Target Start/End: Original strand, 3670062 - 3670091
Alignment:
Q  418 caagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||||||||||||||||||||||||    
T  3670062 caagtgtgagttatatgtcccacatcggat 3670091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 447
Target Start/End: Original strand, 6731906 - 6731935
Alignment:
Q  418 caagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||||||||||||||||||||||||    
T  6731906 caagtgtgagttatatgtcccacatcggat 6731935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 443
Target Start/End: Original strand, 30359599 - 30359636
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatc 443  Q
    ||||||||| ||||||||||||||||||||| ||||||    
T  30359599 tgttgttgtgtacaagtgtgagttatatgtctcacatc 30359636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 447
Target Start/End: Complemental strand, 33113535 - 33113494
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||| ||||||| |||||||||||||| |||||||||    
T  33113535 tgttgttgtgtacaagtttgagttatatgtcctacatcggat 33113494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 447
Target Start/End: Original strand, 45123008 - 45123037
Alignment:
Q  418 caagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||||||||||||||||||||||||    
T  45123008 caagtgtgagttatatgtcccacatcggat 45123037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 419 - 447
Target Start/End: Original strand, 147454 - 147482
Alignment:
Q  419 aagtgtgagttatatgtcccacatcggat 447  Q
    |||||||||||||||||||||||||||||    
T  147454 aagtgtgagttatatgtcccacatcggat 147482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 419 - 447
Target Start/End: Complemental strand, 18372526 - 18372498
Alignment:
Q  419 aagtgtgagttatatgtcccacatcggat 447  Q
    |||||||||||||||||||||||||||||    
T  18372526 aagtgtgagttatatgtcccacatcggat 18372498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 405 - 447
Target Start/End: Original strand, 52634665 - 52634707
Alignment:
Q  405 ttgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  52634665 ttgttgttgtgtacaagtgtgagttatatgtcccacatcggat 52634707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 406 - 447
Target Start/End: Complemental strand, 32463069 - 32463028
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  32463069 tgttgttgtgtacaagtgtgagttatatgtcccacatcggat 32463028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 406 - 447
Target Start/End: Original strand, 45901703 - 45901744
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  45901703 tgttgttgtgtacaagtgtgagttatatgtcccacatcggat 45901744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 406 - 444
Target Start/End: Complemental strand, 32462727 - 32462689
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatcg 444  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  32462727 tgttgttgtgtacaagtgtgagttatatgtcccacatcg 32462689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 409 - 447
Target Start/End: Original strand, 35946515 - 35946553
Alignment:
Q  409 tgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  35946515 tgttgtgtacaagtgtgagttatatgtcccacatcggat 35946553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 406 - 447
Target Start/End: Original strand, 11661525 - 11661566
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    ||||| ||| ||||||||||||||||||||||||||||||||    
T  11661525 tgttggtgtgtacaagtgtgagttatatgtcccacatcggat 11661566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 406 - 443
Target Start/End: Complemental strand, 22304116 - 22304079
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatc 443  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  22304116 tgttgttgtgtacaagtgtgagttatatgtcccacatc 22304079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 406 - 447
Target Start/End: Complemental strand, 25739593 - 25739552
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||| | ||||||||||||||||||||||||||||||    
T  25739593 tgttgttgtgtgcaagtgtgagttatatgtcccacatcggat 25739552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 406 - 447
Target Start/End: Complemental strand, 37990807 - 37990766
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||| |||||||||||||||||||| |||||||||||    
T  37990807 tgttgttgtgtacaagtgtgagttatatgttccacatcggat 37990766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 406 - 443
Target Start/End: Complemental strand, 43346959 - 43346922
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatc 443  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  43346959 tgttgttgtgtacaagtgtgagttatatgtcccacatc 43346922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 408 - 447
Target Start/End: Complemental strand, 12747918 - 12747879
Alignment:
Q  408 ttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    ||||||| | ||||||||||||||||||||||||||||||    
T  12747918 ttgttgtgtgcaagtgtgagttatatgtcccacatcggat 12747879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 405
Target Start/End: Original strand, 15673668 - 15673719
Alignment:
Q  354 tagcttttatccatcgaccattttctttctccacataagcttttaacttctt 405  Q
    |||||||||||  ||||||| |||||||||||||| ||||||| ||||||||    
T  15673668 tagcttttatctgtcgaccactttctttctccacaaaagctttaaacttctt 15673719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 405 - 447
Target Start/End: Complemental strand, 1634484 - 1634442
Alignment:
Q  405 ttgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    |||||| ||| | ||||||||||||||||||||||||||||||    
T  1634484 ttgttgctgtgtgcaagtgtgagttatatgtcccacatcggat 1634442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 406 - 440
Target Start/End: Complemental strand, 3135629 - 3135595
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccac 440  Q
    ||||||||| |||||||||||||||||||||||||    
T  3135629 tgttgttgtgtacaagtgtgagttatatgtcccac 3135595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 409 - 447
Target Start/End: Original strand, 8327897 - 8327935
Alignment:
Q  409 tgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    |||||| | ||||||||||||||||||||||||||||||    
T  8327897 tgttgtgtgcaagtgtgagttatatgtcccacatcggat 8327935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 406 - 444
Target Start/End: Original strand, 15773182 - 15773220
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatcg 444  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  15773182 tgttgttgtgtgcaagtgtgagttatatgtcccacatcg 15773220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 448
Target Start/End: Complemental strand, 29644737 - 29644707
Alignment:
Q  418 caagtgtgagttatatgtcccacatcggatt 448  Q
    |||||||||||||||||||||||||||||||    
T  29644737 caagtgtgagttatatgtcccacatcggatt 29644707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 405 - 447
Target Start/End: Complemental strand, 29645071 - 29645029
Alignment:
Q  405 ttgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    |||||||||| | ||||||| ||||||||||||||||||||||    
T  29645071 ttgttgttgtgtgcaagtgtaagttatatgtcccacatcggat 29645029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 405 - 447
Target Start/End: Complemental strand, 49336856 - 49336814
Alignment:
Q  405 ttgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    |||||||||| ||||||||||||||| ||||| ||||||||||    
T  49336856 ttgttgttgtgtacaagtgtgagttacatgtctcacatcggat 49336814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 405 - 447
Target Start/End: Original strand, 53577353 - 53577395
Alignment:
Q  405 ttgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    |||||||||| | ||||||||||||||||||| ||||||||||    
T  53577353 ttgttgttgtgtgcaagtgtgagttatatgtcacacatcggat 53577395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 447
Target Start/End: Original strand, 22304248 - 22304277
Alignment:
Q  418 caagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||||||||||||||||||||||||    
T  22304248 caagtgtgagttatatgtcccacatcggat 22304277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 443
Target Start/End: Original strand, 25755384 - 25755421
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatc 443  Q
    ||||||||| ||||||||||||||||||||| ||||||    
T  25755384 tgttgttgtgtacaagtgtgagttatatgtctcacatc 25755421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 447
Target Start/End: Original strand, 31190007 - 31190048
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||| | ||||||||||| ||||||||||||||||||    
T  31190007 tgttgttgtgtgcaagtgtgagtgatatgtcccacatcggat 31190048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 447
Target Start/End: Complemental strand, 37991145 - 37991104
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||| ||||||||||||||||||||| ||||| ||||    
T  37991145 tgttgttgtgtacaagtgtgagttatatgtctcacattggat 37991104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 447
Target Start/End: Complemental strand, 39336385 - 39336356
Alignment:
Q  418 caagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||||||||||||||||||||||||    
T  39336385 caagtgtgagttatatgtcccacatcggat 39336356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 443
Target Start/End: Original strand, 39914238 - 39914279
Alignment:
Q  402 tctttgttgttgtatacaagtgtgagttatatgtcccacatc 443  Q
    ||||||||||||| | ||||||||||||||||||| ||||||    
T  39914238 tctttgttgttgtgtgcaagtgtgagttatatgtctcacatc 39914279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 443
Target Start/End: Complemental strand, 42342556 - 42342519
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatc 443  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  42342556 tgttgttgtgtgcaagtgtgagttatatgtcccacatc 42342519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 447
Target Start/End: Original strand, 43346640 - 43346681
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||| | |||||||||||| |||||||||||||||||    
T  43346640 tgttgttgtgtgcaagtgtgagttgtatgtcccacatcggat 43346681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 447
Target Start/End: Complemental strand, 50612608 - 50612579
Alignment:
Q  418 caagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||||||||||||||||||||||||    
T  50612608 caagtgtgagttatatgtcccacatcggat 50612579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 406 - 447
Target Start/End: Original strand, 30244260 - 30244301
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  30244260 tgttgttgtgtacaagtgtgagttatatgtcccacatcggat 30244301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 406 - 447
Target Start/End: Complemental strand, 1085784 - 1085743
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||| | ||||||||||||||||||||||||||||||    
T  1085784 tgttgttgtgtgcaagtgtgagttatatgtcccacatcggat 1085743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 406 - 447
Target Start/End: Original strand, 7517570 - 7517611
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||| | ||||||||||||||||||||||||||||||    
T  7517570 tgttgttgtgtgcaagtgtgagttatatgtcccacatcggat 7517611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 406 - 447
Target Start/End: Original strand, 7554015 - 7554056
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||| | ||||||||||||||||||||||||||||||    
T  7554015 tgttgttgtgtgcaagtgtgagttatatgtcccacatcggat 7554056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 406 - 447
Target Start/End: Original strand, 16569186 - 16569227
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||||| ||||||||||||||||||| ||||||||||    
T  16569186 tgttgttgtatgcaagtgtgagttatatgtctcacatcggat 16569227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 406 - 447
Target Start/End: Complemental strand, 16596476 - 16596435
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||||| ||||||||||||||||||| ||||||||||    
T  16596476 tgttgttgtatgcaagtgtgagttatatgtctcacatcggat 16596435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 406 - 447
Target Start/End: Complemental strand, 22566830 - 22566789
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||||| ||||||||||| ||||||||||||||||||    
T  22566830 tgttgttgtatgcaagtgtgagtaatatgtcccacatcggat 22566789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 406 - 447
Target Start/End: Original strand, 30245067 - 30245108
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||| |||||||||||||||||||| |||||||||||    
T  30245067 tgttgttgtgtacaagtgtgagttatatgttccacatcggat 30245108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 406 - 447
Target Start/End: Complemental strand, 36967397 - 36967356
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||| ||||||||||||||||||||| ||||||||||    
T  36967397 tgttgttgtgtacaagtgtgagttatatgtctcacatcggat 36967356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 406 - 447
Target Start/End: Original strand, 45434626 - 45434667
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||| ||||||||| ||||||||||||||||||||||    
T  45434626 tgttgttgtgtacaagtgtaagttatatgtcccacatcggat 45434667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 405 - 447
Target Start/End: Original strand, 20599303 - 20599345
Alignment:
Q  405 ttgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    |||||||||| || ||||||||||||||||||||| |||||||    
T  20599303 ttgttgttgtctataagtgtgagttatatgtcccatatcggat 20599345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 405 - 447
Target Start/End: Complemental strand, 34218203 - 34218161
Alignment:
Q  405 ttgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    |||||||||| ||||| ||||||||||||||| ||||||||||    
T  34218203 ttgttgttgtgtacaaatgtgagttatatgtctcacatcggat 34218161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 405 - 447
Target Start/End: Original strand, 43241484 - 43241526
Alignment:
Q  405 ttgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    |||||||||| | |||||||||||||||||| |||||||||||    
T  43241484 ttgttgttgtgtgcaagtgtgagttatatgttccacatcggat 43241526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 405 - 447
Target Start/End: Original strand, 45754705 - 45754746
Alignment:
Q  405 ttgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    |||||||||| |||||||||||||||||||| |||||||||||    
T  45754705 ttgttgttgtgtacaagtgtgagttatatgt-ccacatcggat 45754746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 447
Target Start/End: Original strand, 24177425 - 24177466
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||| | ||||| ||||||||||||||||||||||||    
T  24177425 tgttgttgtgtgcaagtatgagttatatgtcccacatcggat 24177466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 447
Target Start/End: Original strand, 30244691 - 30244732
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||| | ||||||||||||||||||||||||| ||||    
T  30244691 tgttgttgtgtgcaagtgtgagttatatgtcccacattggat 30244732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 443
Target Start/End: Original strand, 30245484 - 30245521
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatc 443  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  30245484 tgttgttgtgtgcaagtgtgagttatatgtcccacatc 30245521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 447
Target Start/End: Original strand, 30255329 - 30255370
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||| | |||||||| |||||||||||||||||||||    
T  30255329 tgttgttgtgtgcaagtgtgcgttatatgtcccacatcggat 30255370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 447
Target Start/End: Original strand, 36622962 - 36622991
Alignment:
Q  418 caagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||||||||||||||||||||||||    
T  36622962 caagtgtgagttatatgtcccacatcggat 36622991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 447
Target Start/End: Complemental strand, 41910762 - 41910721
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||| |  |||||||||||||||||||||||||||||    
T  41910762 tgttgttgtgtgtaagtgtgagttatatgtcccacatcggat 41910721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 447
Target Start/End: Original strand, 45433231 - 45433272
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||| |||||||||||||||||||  |||||||||||    
T  45433231 tgttgttgtgtacaagtgtgagttatatgatccacatcggat 45433272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 447
Target Start/End: Original strand, 47129085 - 47129126
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    |||||||||  |||||||||||||||||||| ||||||||||    
T  47129085 tgttgttgtgcacaagtgtgagttatatgtctcacatcggat 47129126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 406 - 447
Target Start/End: Complemental strand, 26074950 - 26074909
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  26074950 tgttgttgtgtacaagtgtgagttatatgtcccacatcggat 26074909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 404 - 447
Target Start/End: Complemental strand, 12662822 - 12662779
Alignment:
Q  404 tttgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||||| | ||||||||||||||||||||||||||||||    
T  12662822 tttgttgttgtgtgcaagtgtgagttatatgtcccacatcggat 12662779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 409 - 447
Target Start/End: Complemental strand, 1028682 - 1028644
Alignment:
Q  409 tgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  1028682 tgttgtgtacaagtgtgagttatatgtcccacatcggat 1028644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 405 - 447
Target Start/End: Complemental strand, 36492386 - 36492344
Alignment:
Q  405 ttgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    |||||||||| | ||||||||||||||||||||||||||||||    
T  36492386 ttgttgttgtttgcaagtgtgagttatatgtcccacatcggat 36492344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 406 - 447
Target Start/End: Original strand, 6224186 - 6224227
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||| ||||||||||||||||||||||||| ||||||    
T  6224186 tgttgttgtgtacaagtgtgagttatatgtcccacttcggat 6224227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 406 - 447
Target Start/End: Complemental strand, 42405764 - 42405723
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||| |||||||||||||||||||||| |||||||||    
T  42405764 tgttgttgtgtacaagtgtgagttatatgtccaacatcggat 42405723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 444
Target Start/End: Original strand, 15370088 - 15370127
Alignment:
Q  405 ttgttgttgtatacaagtgtgagttatatgtcccacatcg 444  Q
    |||||||||| | |||||||||||||||||||||||||||    
T  15370088 ttgttgttgtgtgcaagtgtgagttatatgtcccacatcg 15370127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 408 - 443
Target Start/End: Complemental strand, 36527249 - 36527214
Alignment:
Q  408 ttgttgtatacaagtgtgagttatatgtcccacatc 443  Q
    ||||||| ||||||||||||||||||||||||||||    
T  36527249 ttgttgtgtacaagtgtgagttatatgtcccacatc 36527214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 409 - 447
Target Start/End: Complemental strand, 13415925 - 13415887
Alignment:
Q  409 tgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    |||||| | ||||||||||||||||||||||||||||||    
T  13415925 tgttgtgtgcaagtgtgagttatatgtcccacatcggat 13415887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 405 - 447
Target Start/End: Complemental strand, 26075331 - 26075289
Alignment:
Q  405 ttgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    |||||||||| ||||||||||| ||||||||| ||||||||||    
T  26075331 ttgttgttgtgtacaagtgtgatttatatgtctcacatcggat 26075289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 406 - 444
Target Start/End: Original strand, 35150737 - 35150775
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatcg 444  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  35150737 tgttgttgtgtgcaagtgtgagttatatgtcccacatcg 35150775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 406 - 444
Target Start/End: Original strand, 35151028 - 35151066
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatcg 444  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  35151028 tgttgttgtgtgcaagtgtgagttatatgtcccacatcg 35151066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 409 - 447
Target Start/End: Complemental strand, 36568732 - 36568694
Alignment:
Q  409 tgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    |||||| | ||||||||||||||||||||||||||||||    
T  36568732 tgttgtgtgcaagtgtgagttatatgtcccacatcggat 36568694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 409 - 447
Target Start/End: Original strand, 39309677 - 39309715
Alignment:
Q  409 tgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    |||||| ||||||| ||||||||||||||||||||||||    
T  39309677 tgttgtgtacaagtatgagttatatgtcccacatcggat 39309715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 447
Target Start/End: Original strand, 299491 - 299520
Alignment:
Q  418 caagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||||||||||||||||||||||||    
T  299491 caagtgtgagttatatgtcccacatcggat 299520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 447
Target Start/End: Complemental strand, 5723947 - 5723918
Alignment:
Q  418 caagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||||||||||||||||||||||||    
T  5723947 caagtgtgagttatatgtcccacatcggat 5723918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 447
Target Start/End: Original strand, 32487396 - 32487425
Alignment:
Q  418 caagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||||||||||||||||||||||||    
T  32487396 caagtgtgagttatatgtcccacatcggat 32487425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 447
Target Start/End: Original strand, 35150009 - 35150038
Alignment:
Q  418 caagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||||||||||||||||||||||||    
T  35150009 caagtgtgagttatatgtcccacatcggat 35150038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 447
Target Start/End: Complemental strand, 40296471 - 40296442
Alignment:
Q  418 caagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||||||||||||||||||||||||    
T  40296471 caagtgtgagttatatgtcccacatcggat 40296442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 406 - 447
Target Start/End: Original strand, 6712966 - 6713007
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  6712966 tgttgttgtatacaagtgtgagttatatgtctcacatcggat 6713007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 405 - 444
Target Start/End: Complemental strand, 36006048 - 36006009
Alignment:
Q  405 ttgttgttgtatacaagtgtgagttatatgtcccacatcg 444  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  36006048 ttgttgttgtgtacaagtgtgagttatatgtcccacatcg 36006009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 400 - 443
Target Start/End: Complemental strand, 38796794 - 38796751
Alignment:
Q  400 cttctttgttgttgtatacaagtgtgagttatatgtcccacatc 443  Q
    ||||||||||||||| | ||||||||||||||||||||||||||    
T  38796794 cttctttgttgttgtgtgcaagtgtgagttatatgtcccacatc 38796751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 409 - 447
Target Start/End: Original strand, 962591 - 962629
Alignment:
Q  409 tgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  962591 tgttgtatgcaagtgtgagttatatgtcccacatcggat 962629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 406 - 447
Target Start/End: Original strand, 6421294 - 6421335
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||| ||||||||| ||||||||||||||||||||||    
T  6421294 tgttgttgtgtacaagtgtaagttatatgtcccacatcggat 6421335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 406 - 447
Target Start/End: Original strand, 6421375 - 6421416
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    |||||||||  |||||||||||||||||||||||||||||||    
T  6421375 tgttgttgtgcacaagtgtgagttatatgtcccacatcggat 6421416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 406 - 447
Target Start/End: Original strand, 15880253 - 15880294
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||| |||||||||||||||||||| |||||||||||    
T  15880253 tgttgttgtgtacaagtgtgagttatatgttccacatcggat 15880294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 406 - 447
Target Start/End: Complemental strand, 31468914 - 31468873
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||| | ||||||||||||||||||||||||||||||    
T  31468914 tgttgttgtgtgcaagtgtgagttatatgtcccacatcggat 31468873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 406 - 447
Target Start/End: Complemental strand, 36785731 - 36785690
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||| | ||||||||||||||||||||||||||||||    
T  36785731 tgttgttgtgtgcaagtgtgagttatatgtcccacatcggat 36785690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 406 - 447
Target Start/End: Complemental strand, 38796386 - 38796345
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||| | ||||||||||||||||||||||||||||||    
T  38796386 tgttgttgtgtgcaagtgtgagttatatgtcccacatcggat 38796345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 409 - 447
Target Start/End: Complemental strand, 28531479 - 28531441
Alignment:
Q  409 tgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    |||||| | ||||||||||||||||||||||||||||||    
T  28531479 tgttgtgtgcaagtgtgagttatatgtcccacatcggat 28531441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 406 - 444
Target Start/End: Original strand, 40733873 - 40733911
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatcg 444  Q
    |||| |||| |||||||||||||||||||||||||||||    
T  40733873 tgttattgtgtacaagtgtgagttatatgtcccacatcg 40733911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 447
Target Start/End: Original strand, 3673075 - 3673116
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||| | ||||||||||||||||||||||||| ||||    
T  3673075 tgttgttgtgtgcaagtgtgagttatatgtcccacattggat 3673116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 447
Target Start/End: Original strand, 16542439 - 16542480
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||| | ||||||||||||||| ||||||||||||||    
T  16542439 tgttgttgtgtgcaagtgtgagttataagtcccacatcggat 16542480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 447
Target Start/End: Original strand, 29676893 - 29676934
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||| | || |||||||||||||||||||||||||||    
T  29676893 tgttgttgtgtgcaggtgtgagttatatgtcccacatcggat 29676934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 447
Target Start/End: Complemental strand, 35580879 - 35580850
Alignment:
Q  418 caagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||||||||||||||||||||||||    
T  35580879 caagtgtgagttatatgtcccacatcggat 35580850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 447
Target Start/End: Complemental strand, 36178761 - 36178732
Alignment:
Q  418 caagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||||||||||||||||||||||||    
T  36178761 caagtgtgagttatatgtcccacatcggat 36178732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 447
Target Start/End: Original strand, 37106190 - 37106219
Alignment:
Q  418 caagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||||||||||||||||||||||||    
T  37106190 caagtgtgagttatatgtcccacatcggat 37106219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 443
Target Start/End: Original strand, 40733507 - 40733544
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatc 443  Q
    |||| |||| ||||||||||||||||||||||||||||    
T  40733507 tgttattgtgtacaagtgtgagttatatgtcccacatc 40733544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 407 - 443
Target Start/End: Complemental strand, 12529195 - 12529159
Alignment:
Q  407 gttgttgtatacaagtgtgagttatatgtcccacatc 443  Q
    |||||||||| |||||||||||||||||||| |||||    
T  12529195 gttgttgtatgcaagtgtgagttatatgtcctacatc 12529159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 404 - 447
Target Start/End: Complemental strand, 2580042 - 2579999
Alignment:
Q  404 tttgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||||| | ||||||||||||||||||||||||||||||    
T  2580042 tttgttgttgtgtgcaagtgtgagttatatgtcccacatcggat 2579999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 406 - 447
Target Start/End: Complemental strand, 2579273 - 2579232
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||| ||||||||| ||||||||||||||||||||||    
T  2579273 tgttgttgtgtacaagtgttagttatatgtcccacatcggat 2579232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 405 - 445
Target Start/End: Original strand, 2377743 - 2377783
Alignment:
Q  405 ttgttgttgtatacaagtgtgagttatatgtcccacatcgg 445  Q
    ||||||||||  |||||||||||||||||||||||||||||    
T  2377743 ttgttgttgtgcacaagtgtgagttatatgtcccacatcgg 2377783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 441
Target Start/End: Complemental strand, 2578610 - 2578575
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccaca 441  Q
    ||||||||| ||||||||||||||||||||||||||    
T  2578610 tgttgttgtgtacaagtgtgagttatatgtcccaca 2578575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 405 - 447
Target Start/End: Original strand, 16107667 - 16107709
Alignment:
Q  405 ttgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    |||||||||| ||||||||||||||||||||  ||||||||||    
T  16107667 ttgttgttgtgtacaagtgtgagttatatgtgtcacatcggat 16107709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 447
Target Start/End: Complemental strand, 1950353 - 1950312
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||  || |||||||||||||||||||||||||||||    
T  1950353 tgttgttgcgtataagtgtgagttatatgtcccacatcggat 1950312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 447
Target Start/End: Original strand, 2378128 - 2378157
Alignment:
Q  418 caagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||||||||||||||||||||||||    
T  2378128 caagtgtgagttatatgtcccacatcggat 2378157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 447
Target Start/End: Complemental strand, 14748494 - 14748465
Alignment:
Q  418 caagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||||||||||||||||||||||||    
T  14748494 caagtgtgagttatatgtcccacatcggat 14748465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 443
Target Start/End: Original strand, 16108053 - 16108090
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatc 443  Q
    ||||||||| |||||||||||||||||||| |||||||    
T  16108053 tgttgttgtgtacaagtgtgagttatatgttccacatc 16108090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 443
Target Start/End: Original strand, 16454565 - 16454602
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatc 443  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  16454565 tgttgttgtgtacaagtgtgagttatgtgtcccacatc 16454602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 447
Target Start/End: Original strand, 26544051 - 26544080
Alignment:
Q  418 caagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||||||||||||||||||||||||    
T  26544051 caagtgtgagttatatgtcccacatcggat 26544080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 447
Target Start/End: Original strand, 29518505 - 29518534
Alignment:
Q  418 caagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||||||||||||||||||||||||    
T  29518505 caagtgtgagttatatgtcccacatcggat 29518534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 447
Target Start/End: Original strand, 29518922 - 29518951
Alignment:
Q  418 caagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||||||||||||||||||||||||    
T  29518922 caagtgtgagttatatgtcccacatcggat 29518951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 447
Target Start/End: Original strand, 32741181 - 32741210
Alignment:
Q  418 caagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||||||||||||||||||||||||    
T  32741181 caagtgtgagttatatgtcccacatcggat 32741210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 406 - 447
Target Start/End: Complemental strand, 1274 - 1233
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||| ||||||||||||||||||||||||||| ||||    
T  1274 tgttgttgtgtacaagtgtgagttatatgtcccacattggat 1233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 447
Target Start/End: Complemental strand, 3153 - 3112
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||| | || |||||||||||||||||||||||||||    
T  3153 tgttgttgtgtgcaggtgtgagttatatgtcccacatcggat 3112  T

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Target: scaffold0702 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 405 - 445
Target Start/End: Complemental strand, 683 - 643
Alignment:
Q  405 ttgttgttgtatacaagtgtgagttatatgtcccacatcgg 445  Q
    ||||||||||  |||||||||||||||||||||||||||||    
T  683 ttgttgttgtgcacaagtgtgagttatatgtcccacatcgg 643  T

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Target: scaffold0702; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 447
Target Start/End: Complemental strand, 298 - 269
Alignment:
Q  418 caagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||||||||||||||||||||||||    
T  298 caagtgtgagttatatgtcccacatcggat 269  T

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Target: scaffold0113 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 408 - 447
Target Start/End: Original strand, 39830 - 39869
Alignment:
Q  408 ttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    ||||||| | ||||||||||||||||||||||||||||||    
T  39830 ttgttgtgttcaagtgtgagttatatgtcccacatcggat 39869  T

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Target: scaffold0734 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0734
Description:

Target: scaffold0734; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 405 - 447
Target Start/End: Original strand, 5385 - 5427
Alignment:
Q  405 ttgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    |||||||||| | |||||||||||||||||||| |||||||||    
T  5385 ttgttgttgtgtgcaagtgtgagttatatgtcctacatcggat 5427  T

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Target: scaffold0734; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 447
Target Start/End: Original strand, 5767 - 5808
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    ||||||||| | ||||||||||||||||||| ||||||||||    
T  5767 tgttgttgtgtgcaagtgtgagttatatgtcgcacatcggat 5808  T

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Target: scaffold0504 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 447
Target Start/End: Complemental strand, 10279 - 10238
Alignment:
Q  406 tgttgttgtatacaagtgtgagttatatgtcccacatcggat 447  Q
    |||||||||  |||||||||||||||||||| ||||||||||    
T  10279 tgttgttgtgcacaagtgtgagttatatgtctcacatcggat 10238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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