View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1922_low_1 (Length: 651)
Name: NF1922_low_1
Description: NF1922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1922_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 595; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 19 - 641
Target Start/End: Complemental strand, 2786786 - 2786164
Alignment:
| Q |
19 |
aaaatcgccaagtccctttgtgggaacgaacctgctgtttccaactctcagtttgccctagtcacctatcatactcatggcatttatgctcctgttctcg |
118 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
2786786 |
aaaatcgtcaagtccctttgtgggaacgaacctgctgtttccaacgctcagtttgccctagtcacctatcatactcatggcatttattctcctgttctcg |
2786687 |
T |
|
| Q |
119 |
tgcaacgttctggctggacaagagatccagaagttttcttagattggttatcatctatatccttttccggtggtggttttaatgacaccgctgtcgctga |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
2786686 |
tgcaacgttctggctggacaagagatccagaagttttcttagattggttatcatctatatccttttccggtggtggtttaaatgacaccgctgtcgctga |
2786587 |
T |
|
| Q |
219 |
agggcttgctgaagctttgatgatgttctccccgtctcaaagtgaaagccctaatcaaaagaatgttgatatgccaatgcactgtattcttgtggcagcc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2786586 |
agggcttgctgaagctttgatgatgttctccccgtctcaaagtgaaagccctaatcaaaagaatgttgatatgccaatgcactgtattcttgtggcagcc |
2786487 |
T |
|
| Q |
319 |
agtaatccttatccattgaagagaccaatatatgttcccaagaagaatgaatccattgactcggaatcaggtaaccagttttatgatgctgaagatgttg |
418 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2786486 |
agtaatccttatccattgaagagaccaatatatgttcccaagaagaatgaatccattgactcggaatcaggtaaccagttttatgatgctgaagatgttg |
2786387 |
T |
|
| Q |
419 |
ctaaagcatttccgcagttttctatttctctatctgtcatctgcccaagaaatcttcccaaaatcaaagccatctacaatgctggagctgtcaatccacc |
518 |
Q |
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| T |
2786386 |
ctaaagcatttccgcagttttctatttctctatctgtcatctgcccaagaaatcttcccaaaatcaaagccatctacaatgctggagctgtcaatccacc |
2786287 |
T |
|
| Q |
519 |
tgttgatgcgaaaccccctcttgttttgatatcagaaggtttcagggaagcccgcactgccttgagtccttccggaacaacaaacttgccttcaaatcaa |
618 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2786286 |
ggttgatgctaaaccccctcttgttttgatatcagaaggtttcagggaagcccgcactgccttgagtccttccggaacaacaaacttgccttcaaatcaa |
2786187 |
T |
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| Q |
619 |
attcatgttaaagttgatgatgt |
641 |
Q |
| |
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||||||||||||||||| ||||| |
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| T |
2786186 |
attcatgttaaagttgacgatgt |
2786164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 115 - 240
Target Start/End: Original strand, 22515971 - 22516096
Alignment:
| Q |
115 |
ctcgtgcaacgttctggctggacaagagatccagaagttttcttagattggttatcatctatatccttttccggtggtggttttaatgacaccgctgtcg |
214 |
Q |
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|||||||||||| |||||||||||||||| ||||| ||||||||| | ||| || ||||||| | ||||| |||||||||||||||||| | ||| | | |
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| T |
22515971 |
ctcgtgcaacgtactggctggacaagagacccagatgttttcttacagtggctagaatctataccattttctggtggtggttttaatgacgcagctattg |
22516070 |
T |
|
| Q |
215 |
ctgaagggcttgctgaagctttgatg |
240 |
Q |
| |
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|||||||||||||||||||| ||||| |
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| T |
22516071 |
ctgaagggcttgctgaagctctgatg |
22516096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 240 - 356
Target Start/End: Original strand, 22517146 - 22517262
Alignment:
| Q |
240 |
gatgttctccccgtctcaaagtgaaagccctaatcaaaagaatgttgatatgccaatgcactgtattcttgtggcagccagtaatccttatccattgaag |
339 |
Q |
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||||||| |||| |||||||||| | ||| ||||| ||||||| |||| | ||||||||||| ||||||||||||||||||||||| |||||| || |
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| T |
22517146 |
gatgttccccccttctcaaagtggaggcctaaatcagcagaatgtggatacgaacatgcactgtatccttgtggcagccagtaatccttacccattgcag |
22517245 |
T |
|
| Q |
340 |
agaccaatatatgttcc |
356 |
Q |
| |
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| ||| |||||||||| |
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| T |
22517246 |
acaccggtatatgttcc |
22517262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 441 - 500
Target Start/End: Original strand, 22517462 - 22517521
Alignment:
| Q |
441 |
tatttctctatctgtcatctgcccaagaaatcttcccaaaatcaaagccatctacaatgc |
500 |
Q |
| |
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|||||||||||| ||| ||||||||| | | ||||||||||| ||||||||||||||||| |
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| T |
22517462 |
tatttctctatcggtcgtctgcccaaaacaacttcccaaaattaaagccatctacaatgc |
22517521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 359 - 435
Target Start/End: Original strand, 22517280 - 22517356
Alignment:
| Q |
359 |
agaagaatgaatccattgactcggaatcaggt-aaccagttttatgatgctgaagatgttgctaaagcatttccgcag |
435 |
Q |
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|||||| ||||||||||||||| || || || |||||||| ||||||||||||| |||||||||||| ||||||||| |
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| T |
22517280 |
agaagactgaatccattgactca-aaccaagtgaaccagttatatgatgctgaagctgttgctaaagcgtttccgcag |
22517356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 537 - 586
Target Start/End: Original strand, 22518232 - 22518281
Alignment:
| Q |
537 |
tcttgttttgatatcagaaggtttcagggaagcccgcactgccttgagtc |
586 |
Q |
| |
|
|||| |||| |||||||||||||| ||||||||||||| ||||||||||| |
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| T |
22518232 |
tcttattttaatatcagaaggttttagggaagcccgcagtgccttgagtc |
22518281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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