View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1922_low_2 (Length: 236)
Name: NF1922_low_2
Description: NF1922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1922_low_2 |
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| [»] chr5 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 15627828 - 15627612
Alignment:
| Q |
20 |
ctgatgtaatagaaccatgggagcttgaagttgggccacatagatactcctatcaagagctcaacaaagctacaaaaggtttcaaggagaaagagctact |
119 |
Q |
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| T |
15627828 |
ctgatgtaatagaaccatgggagcttgaagttgggccacatagatactcctatcaagagctcaacaaagctacaaaaggtttcaaggagaaagagctact |
15627729 |
T |
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| Q |
120 |
tgggcagggtggttttggaagagtttacaaagggacattgccagattcaaatattcaagtagctgttaagagattttcacatgaatcaaaacaagggttt |
219 |
Q |
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| T |
15627728 |
tgggcagggtggttttggaagagtttacaaagggacattgccagattcaaatattcaagtagctgttaagagattttcacatgaatcaaaacaagggctt |
15627629 |
T |
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| Q |
220 |
agggaattcgtgtctga |
236 |
Q |
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| T |
15627628 |
agggaattcgtgtctga |
15627612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 20 - 236
Target Start/End: Original strand, 22933838 - 22934054
Alignment:
| Q |
20 |
ctgatgtaatagaaccatgggagcttgaagttgggccacatagatactcctatcaagagctcaacaaagctacaaaaggtttcaaggagaaagagctact |
119 |
Q |
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||||||| || ||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| | || |
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| T |
22933838 |
ctgatgttattgaagcatgggagcttgaagttgggccacatagatactcctatgaagagctcaagaaagctacaaaaggtttcaaggagaaagagttgct |
22933937 |
T |
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| Q |
120 |
tgggcagggtggttttggaagagtttacaaagggacattgccagattcaaatattcaagtagctgttaagagattttcacatgaatcaaaacaagggttt |
219 |
Q |
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| T |
22933938 |
tgggcagggtggttttgggaaagtttacaatggaatattgccgaaatcgaagattcaagtggctgttaagagagtttcacatgaatcaaaacaagggttg |
22934037 |
T |
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| Q |
220 |
agggaattcgtgtctga |
236 |
Q |
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| T |
22934038 |
agagaatttgtatctga |
22934054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 22921753 - 22921537
Alignment:
| Q |
20 |
ctgatgtaatagaaccatgggagcttgaagttgggccacatagatactcctatcaagagctcaacaaagctacaaaaggtttcaaggagaaagagctact |
119 |
Q |
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||||||| || ||| | ||||||||||||||||| ||||||||||| | ||||||||||| || ||||||||||||||||||||||||||| || | || |
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| T |
22921753 |
ctgatgttattgaagcttgggagcttgaagttggaccacatagatatacttatcaagagctgaagaaagctacaaaaggtttcaaggagaaacagttgct |
22921654 |
T |
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| Q |
120 |
tgggcagggtggttttggaagagtttacaaagggacattgccagattcaaatattcaagtagctgttaagagattttcacatgaatcaaaacaagggttt |
219 |
Q |
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| T |
22921653 |
tgggcagggtggttttggcaaagtttacaatgggatattgccgaaatcgaagattcaagtggctgttaagagagtttcacatgagtcaaaacaagggcta |
22921554 |
T |
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| Q |
220 |
agggaattcgtgtctga |
236 |
Q |
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| T |
22921553 |
agggaatttgtgtctga |
22921537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 23 - 186
Target Start/End: Original strand, 16859567 - 16859745
Alignment:
| Q |
23 |
atgtaatagaaccatgggagcttgaagttgggccacatagatactccta-------tcaagagctcaacaaagctacaaaagg--------tttcaagga |
107 |
Q |
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| T |
16859567 |
atgtaatataagcatgggagcttgctgttgggccacattgatactcctaagtcctatcaagagctcaacaaagctacaaaaggtttgaaggtttcaagga |
16859666 |
T |
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| Q |
108 |
gaaagagctacttgggcagggtggttttggaagagtttacaaagggacattgccagattcaaatattcaagtagctgtt |
186 |
Q |
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| T |
16859667 |
gaaagagttatttgggacgggtggttttggcagagtttacaaaggaacattgtcaaaataaaagatccaagtagctgtt |
16859745 |
T |
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