View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1922_low_3_N (Length: 423)
Name: NF1922_low_3_N
Description: NF1922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1922_low_3_N |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 30 - 423
Target Start/End: Original strand, 37822400 - 37822791
Alignment:
| Q |
30 |
attggcattatcctgctttatcagaatctctcgaataccatacttaaagcaatttgaaaaattaaacttatcgttcttactgagaaatctgagctactat |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37822400 |
attggcattatcctgctttatcagaatctctcgaataccatacttaaagcaatttgaaaaattaaacttatcgttcttactgagaaatctgagctactat |
37822499 |
T |
|
| Q |
130 |
gttttcaaagtcaataacttacccagcagagcttttgaagcttacaaataggcaacctggttgctttatccttctccttttacatgatgcaattggcgga |
229 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
37822500 |
--tttcaaagtcaataacttacccagtagagcttttgaagcttacaaataggcaacctggttgctttatctttctccttttacatgatgcaattggcgga |
37822597 |
T |
|
| Q |
230 |
taaccttataggtagatgaaaaatattgaacaaatgaagggaggaaaacggcataaaaaacgttaactataacacaaacttgaagctaatttgtcaactt |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37822598 |
taaccttataggtagatgaaaaatattgaacaaatgaagggaggaaaacggcataaaaaacgttaactataacacaaacttgaagctaatttgtcaactt |
37822697 |
T |
|
| Q |
330 |
agcaatgctaaacttcattgtctgcttgatataacaaagggtcaaacaaaattatccttagtcaacaaatgttttcaatttttgaggttcatat |
423 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37822698 |
agcaatgctaaacttcattgtctgcttcatataacgaagggtcaaacaaaattatccttagtcaacaaatgttttcaatttttgaggttcatat |
37822791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University