View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1922_low_4 (Length: 320)
Name: NF1922_low_4
Description: NF1922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1922_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 37 - 241
Target Start/End: Complemental strand, 5576797 - 5576591
Alignment:
| Q |
37 |
catattttgcagagtatagaatatttaatgtgaatttactatgatttgacaataatttaaagttaatttgctatctccatgactaagccatgatttagtt |
136 |
Q |
| |
|
||||||| ||| ||||||||| || |||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
5576797 |
catatttcgcaaagtatagaaaatctaatgtaaatttactatgatttgacaataattaaaagttaatttgctatgtccatgactaagccatgatatagtt |
5576698 |
T |
|
| Q |
137 |
tcattcattttcttcttagttattga-nnnnnnnnnnaagatgtttgttagttgtaaataattggacactaattatgtccatgc-ttagaattagactat |
234 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
5576697 |
tcattcattttcttcttagttattgattttgtttttaaagatgcttcttagttgtaaataattggacactaattatgttcatgcgttagaattagactat |
5576598 |
T |
|
| Q |
235 |
gtctctg |
241 |
Q |
| |
|
|||||| |
|
|
| T |
5576597 |
atctctg |
5576591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 62 - 154
Target Start/End: Complemental strand, 46675377 - 46675285
Alignment:
| Q |
62 |
taatgtgaatttactatgatttgacaataatttaaagttaatttgctatctccatgactaagccatgatttagtttcattcattttcttctta |
154 |
Q |
| |
|
||||||| |||||||||||| ||||| |||||| | ||||||||||||| |||||||||||| |||||||||| |||||| |||||||||||| |
|
|
| T |
46675377 |
taatgtggatttactatgatatgacattaatttgatgttaatttgctatgtccatgactaagtcatgatttagcttcattaattttcttctta |
46675285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University