View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19230_high_1 (Length: 703)

Name: NF19230_high_1
Description: NF19230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19230_high_1
NF19230_high_1
[»] chr2 (4 HSPs)
chr2 (361-692)||(43851572-43851904)
chr2 (16-181)||(43852154-43852319)
chr2 (239-345)||(43851986-43852092)
chr2 (419-477)||(41383017-41383075)
[»] chr6 (4 HSPs)
chr6 (419-507)||(7980036-7980124)
chr6 (378-481)||(7972950-7973053)
chr6 (378-481)||(8040988-8041091)
chr6 (378-481)||(8031620-8031723)
[»] chr7 (1 HSPs)
chr7 (378-519)||(14199116-14199257)
[»] chr3 (2 HSPs)
chr3 (405-521)||(38827942-38828058)
chr3 (418-474)||(361786-361842)
[»] scaffold0531 (1 HSPs)
scaffold0531 (419-481)||(3984-4046)
[»] chr8 (1 HSPs)
chr8 (428-516)||(34408878-34408966)


Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 361 - 692
Target Start/End: Complemental strand, 43851904 - 43851572
Alignment:
Q  361 atatatagtattagtagtataccatccaagacttgccatggcagatggaagactcaagacaccagctccaaccatggcagtaacattgtgaaaagctgcg 460  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43851904 atatatagtattagtagtataccatccaagacttgccatggcagatggaagactcaagacaccagctccaaccatggcagtaacattgtgaaaagctgcg 43851805  T
Q  461 taccaccattttgcattccttgaagaagttatgggaagccaatcatctattgccttttgttcagctgttcttttatctatctgtt-nnnnnnnnngtaca 559  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||    
T  43851804 taccaccattttgcattccttgaagaagttatgggaagccaatcatctattgccttttgttcagctgttcttttatctatctgttaaaaaaaaaagtaca 43851705  T
Q  560 caatatatcagaactagatttttatttatttttcatacaaataaatacaagacataataacaagtgttctcaactggttcttgtgctgagaaagagacct 659  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43851704 caatatatcagaactagatttttatttatttttcatacaaataaatacaagacataataacaagtgttctcaactggttcttgtgctgagaaagagacct 43851605  T
Q  660 tttcagcctctgaagaagcaattggtttttcat 692  Q
    |||||||||||||||||||||||||||||||||    
T  43851604 tttcagcctctgaagaagcaattggtttttcat 43851572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 16 - 181
Target Start/End: Complemental strand, 43852319 - 43852154
Alignment:
Q  16 cataatgaactaataaatgataatccaataaacacttacttatgatgtttcttcgatgaacttatgacacagtatatatagtataccaatagttttgaaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43852319 cataatgaactaataaatgataatccaataaacacttacttatgatgtttcttcgatgaacttatgacacagtatatatagtataccaatagttttgaaa 43852220  T
Q  116 tatgagaattgggatttgacttgtaatttacggtgcataaagaagaatagaaccctgcggccaatt 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43852219 tatgagaattgggatttgacttgtaatttacggtgcataaagaagaatagaaccctgcggccaatt 43852154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 239 - 345
Target Start/End: Complemental strand, 43852092 - 43851986
Alignment:
Q  239 gttggtatagaaggagaaaacaagaagagttcttaattgcactcatgtgattttgtaataagtgaataggttaaacggtaacctaatcggtgttggtttg 338  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43852092 gttggtatagaaggagaaaacaagaagagttcttaattgaactcatgtgattttgtaataagtgaataggttaaacggtaacctaatcggtgttggtttg 43851993  T
Q  339 tgaaaaa 345  Q
    |||||||    
T  43851992 tgaaaaa 43851986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 419 - 477
Target Start/End: Original strand, 41383017 - 41383075
Alignment:
Q  419 acaccagctccaaccatggcagtaacattgtgaaaagctgcgtaccaccattttgcatt 477  Q
    ||||||||||||||||||||||| |||||||| ||||  | ||||||||||||||||||    
T  41383017 acaccagctccaaccatggcagtgacattgtggaaagtagagtaccaccattttgcatt 41383075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 2e-23; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 419 - 507
Target Start/End: Original strand, 7980036 - 7980124
Alignment:
Q  419 acaccagctccaaccatggcagtaacattgtgaaaagctgcgtaccaccattttgcattccttgaagaagttatgggaagccaatcatc 507  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||  ||| || || |||||||| |||||    
T  7980036 acaccagctccaaccatggcagtgacattgtgaaaagctgagtaccaccattttgcattccttttagatgtaattggaagccactcatc 7980124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 378 - 481
Target Start/End: Original strand, 7972950 - 7973053
Alignment:
Q  378 tataccatccaagacttgccatggcagatggaagactcaaga-caccagctccaaccatggcagtaacattgtgaaaagctgcgtaccaccattttgcat 476  Q
    ||||||||||||||  |||||||||| | || |||| ||||| |||||||||||||||||||||| |||||||| ||||  | |||||||||||||||||    
T  7972950 tataccatccaagagctgccatggcaaaggggagac-caagaacaccagctccaaccatggcagtgacattgtggaaagtcgagtaccaccattttgcat 7973048  T
Q  477 tcctt 481  Q
    |||||    
T  7973049 tcctt 7973053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 378 - 481
Target Start/End: Complemental strand, 8041091 - 8040988
Alignment:
Q  378 tataccatccaagacttgccatggcagatggaagactcaaga-caccagctccaaccatggcagtaacattgtgaaaagctgcgtaccaccattttgcat 476  Q
    ||||||||||||||  |||||||| | | || |||| ||||| |||||||||||||||||||||| |||||||| ||||  | |||||||||||||||||    
T  8041091 tataccatccaagagctgccatggaaaaggggagac-caagaacaccagctccaaccatggcagtgacattgtggaaagtcgagtaccaccattttgcat 8040993  T
Q  477 tcctt 481  Q
    |||||    
T  8040992 tcctt 8040988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 378 - 481
Target Start/End: Complemental strand, 8031723 - 8031620
Alignment:
Q  378 tataccatccaagacttgccatggcagatggaagactcaaga-caccagctccaaccatggcagtaacattgtgaaaagctgcgtaccaccattttgcat 476  Q
    ||||||||||||||  |||||||| | | || |||| ||||| |||||||||||||||| ||||| |||||||| ||||  |  ||||||||||||||||    
T  8031723 tataccatccaagatatgccatggaaaaggggagac-caagaacaccagctccaaccattgcagtgacattgtggaaagaagaataccaccattttgcat 8031625  T
Q  477 tcctt 481  Q
    |||||    
T  8031624 tcctt 8031620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 378 - 519
Target Start/End: Original strand, 14199116 - 14199257
Alignment:
Q  378 tataccatccaagacttgccatggcagatggaagactcaagacaccagctccaaccatggcagtaacattgtgaaaagctgcgtaccaccattttgcatt 477  Q
    |||||||||||||    ||||||||| | || ||||| |  |||||||||||||||||||||||||||||||| || || |  |||||||||||||||||    
T  14199116 tataccatccaagttgagccatggcataagggagactaagaacaccagctccaaccatggcagtaacattgtggaatgcagaataccaccattttgcatt 14199215  T
Q  478 ccttgaagaagttatgggaagccaatcatctattgccttttg 519  Q
     ||||| ||| | || |||||||| ||||| ||||| |||||    
T  14199216 tcttgacgaactaattggaagccagtcatcaattgctttttg 14199257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 405 - 521
Target Start/End: Original strand, 38827942 - 38828058
Alignment:
Q  405 atggaagactcaagacaccagctccaaccatggcagtaacattgtgaaaagctgcgtaccaccattttgcattccttgaagaagttatgggaagccaatc 504  Q
    |||||||||| |  |||||||| ||||||||||| || | |||||| || || |  ||||||||||| ||||| || |||| |||||  |||||||||||    
T  38827942 atggaagactgagaacaccagcaccaaccatggctgttagattgtggaacgccgaataccaccatttggcatttctagaagcagttacaggaagccaatc 38828041  T
Q  505 atctattgccttttgtt 521  Q
    ||| || ||||||||||    
T  38828042 atcaatggccttttgtt 38828058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 418 - 474
Target Start/End: Original strand, 361786 - 361842
Alignment:
Q  418 gacaccagctccaaccatggcagtaacattgtgaaaagctgcgtaccaccattttgc 474  Q
    ||||||||| |||||||| ||||| ||||| ||||||| ||  ||||||||||||||    
T  361786 gacaccagcaccaaccatagcagtcacattatgaaaagttgaataccaccattttgc 361842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 419 - 481
Target Start/End: Original strand, 3984 - 4046
Alignment:
Q  419 acaccagctccaaccatggcagtaacattgtgaaaagctgcgtaccaccattttgcattcctt 481  Q
    ||||||||||||||||| ||||| |||||||| ||||  |  |||||||||||||||||||||    
T  3984 acaccagctccaaccattgcagtgacattgtggaaagaagaataccaccattttgcattcctt 4046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 428 - 516
Target Start/End: Complemental strand, 34408966 - 34408878
Alignment:
Q  428 ccaaccatggcagtaacattgtgaaaagctgcgtaccaccattttgcattccttgaagaagttatgggaagccaatcatctattgcctt 516  Q
    ||||||||||| || | |||||||||||| | |||||||||||| || ||||| || | ||| | ||||||||||||||| || |||||    
T  34408966 ccaaccatggccgtgatattgtgaaaagcagagtaccaccatttggctttcctcgaggcagtgacgggaagccaatcatcgatggcctt 34408878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University