View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19230_high_18 (Length: 290)

Name: NF19230_high_18
Description: NF19230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19230_high_18
NF19230_high_18
[»] scaffold0627 (1 HSPs)
scaffold0627 (1-279)||(5582-5860)
[»] chr6 (1 HSPs)
chr6 (5-279)||(16717299-16717576)
[»] chr5 (17 HSPs)
chr5 (14-279)||(8637865-8638136)
chr5 (19-236)||(9004356-9004576)
chr5 (38-279)||(8546992-8547239)
chr5 (19-279)||(8536486-8536749)
chr5 (19-183)||(1599257-1599421)
chr5 (16-186)||(8529913-8530083)
chr5 (17-182)||(2873494-2873659)
chr5 (19-182)||(8678723-8678886)
chr5 (19-182)||(8645215-8645378)
chr5 (19-183)||(9073689-9073853)
chr5 (17-182)||(2844048-2844213)
chr5 (17-137)||(2855926-2856046)
chr5 (21-137)||(2904045-2904161)
chr5 (37-157)||(31807153-31807273)
chr5 (211-251)||(8678903-8678943)
chr5 (61-113)||(11353619-11353671)
chr5 (61-113)||(11373722-11373774)
[»] chr7 (2 HSPs)
chr7 (19-247)||(35780826-35781057)
chr7 (19-186)||(48360807-48360974)
[»] chr4 (1 HSPs)
chr4 (15-186)||(9444073-9444244)
[»] chr1 (1 HSPs)
chr1 (133-252)||(5131603-5131725)
[»] chr3 (1 HSPs)
chr3 (37-143)||(25290659-25290765)


Alignment Details
Target: scaffold0627 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 5582 - 5860
Alignment:
Q  1 cgtctatagtatcttgttcgaatcatgagactaatgggtgatcgctcaaagtgtaatttagcaaaatgtggttctgaaatcattgctttccaaattttgc 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5582 cgtctatagtatcttgttcgaatcatgagactaatcggtgatcgctcaaagtgtaatttagcaaaatgtggttctgaaatcattgctttccaaattttgc 5681  T
Q  101 acacacatttacatatgagaagagacttgataggaagttgaagaaaaatgtgggtggtgaggtgggatggaagaatatcaaaataacaacattcatgact 200  Q
    ||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  5682 acacacatttacaaatgagaagagacttgatgggaagttgaagaaaaatgtgagtggtgaggtgggatggaagaatatcaaaataacaacattcatgact 5781  T
Q  201 ttctgcctcctcaactttcccttttgctttattgcatcttcggctagccctaacagggataattgaaccctcttttctt 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  5782 ttctgcctcctcaactttcccttttgctttattgcatcttcggctagccctaataggggtaattgaaccctcttttctt 5860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 5 - 279
Target Start/End: Original strand, 16717299 - 16717576
Alignment:
Q  5 tatagtatcttgttcgaatcatgagactaatgggtgatcgctcaaagtgtaatttagcaaaatgtggttctgaaatcattgctttccaaattttgcacac 104  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| | |||||||||||||  ||||||||||||||||||    
T  16717299 tatagtatcttgttcgaatcatgagactaattggtgattgctcaaagtgtaatttagcaaaatgcgattctgaaatcattcttttccaaattttgcacac 16717398  T
Q  105 acatttacatatgagaagagacttgataggaagttgaagaaaaatgtgggtggtgaggtgggatggaagaatatcaaaata---acaacattcatgactt 201  Q
    ||||||||| ||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||    | |||||||| ||||    
T  16717399 acatttacaaatgagaagagacttgatgggaagttgaagcaaaatgtgggcggtgaggtgggatggaagaatatcaaaatagtggcgacattcatcactt 16717498  T
Q  202 tctgcctcctcaactttcccttttgctttattgcatcttcggctagccctaacagggataattgaaccctcttttctt 279  Q
    ||||||||||||||| ||| ||||  ||||||||||||| |||||||||| || ||| | |||||||||| |||||||    
T  16717499 tctgcctcctcaactctccattttcttttattgcatctttggctagcccttacgggggtgattgaacccttttttctt 16717576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 112; Significance: 1e-56; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 14 - 279
Target Start/End: Original strand, 8637865 - 8638136
Alignment:
Q  14 ttgttcgaatcatgagactaatgggtgatcgctcaaagtgtaatttagcaaaatgtggttctgaaatcattgctttccaaattttgcacacacatttaca 113  Q
    |||| |||||||||||||||| ||| | ||||||||| || |||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||    
T  8637865 ttgtccgaatcatgagactaaggggcgctcgctcaaattgcaatttagcaaaatgtggttccgaaatcattgttttccaaatcttgcacacacatttaca 8637964  T
Q  114 tatgagaagagacttgataggaagttgaagaaaaatgtgggtggtgaggtgggatggaagaatatcaaaata---acaa---cattcatgactttctgcc 207  Q
     |||||||||||||| || | ||||||||| | ||| |||||||||| ||||||||||||| ||||||| ||   | ||   |  |||||||||||||      
T  8637965 aatgagaagagacttaatggaaagttgaagcagaatttgggtggtgatgtgggatggaagattatcaaagtatggaaaaagtccatcatgactttctgat 8638064  T
Q  208 tcctcaactttcccttttgctttattgcatcttcggctagccctaacagggataattgaaccctcttttctt 279  Q
    || |||||| ||||||||||||||||||||||| ||||||||||| || |  | |||||||||| |||||||    
T  8638065 tcatcaactctcccttttgctttattgcatcttaggctagccctagcaagagttattgaacccttttttctt 8638136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 9004356 - 9004576
Alignment:
Q  19 cgaatcatgagactaatgggtgatcgctcaaagtgtaatttagcaaaatgtggttctgaaatcattgctttccaaattttgcacacacatttacatatga 118  Q
    ||||||||||||||||| |||| ||||||||| || ||||||||||||||||||| |||||| |||| ||||||||| |||||||||||| |||| || |    
T  9004356 cgaatcatgagactaattggtgctcgctcaaattgcaatttagcaaaatgtggttatgaaataattgttttccaaatcttgcacacacatctacaaataa 9004455  T
Q  119 gaagagacttgataggaagttgaagaaaaatgtgggtggtgaggtgggatggaagaatatcaaaataa---caacattcatgactttctgcctcctcaac 215  Q
    |||||||||| || ||||| ||||| | ||||||| | |||||||| ||||||||| || |||| |||   |||  |||||||||||||||||| |||||    
T  9004456 gaagagacttaatgggaagatgaagcagaatgtggttagtgaggtgagatggaagattagcaaagtaagggcaaagttcatgactttctgcctcatcaac 9004555  T
Q  216 tttcccttttgctttattgca 236  Q
    |||||||||||||||||||||    
T  9004556 tttcccttttgctttattgca 9004576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 38 - 279
Target Start/End: Complemental strand, 8547239 - 8546992
Alignment:
Q  38 gtgatcgctcaaagtgtaatttagcaaaatgtggttctgaaatcattgctttccaaattttgcacacacatttacatatgagaagagacttgataggaag 137  Q
    |||||| ||||||||| ||||||||||||||| |||||||||| |||| ||||||||| ||||| ||||||||||| |||||||||||||||||  ||||    
T  8547239 gtgatctctcaaagtgcaatttagcaaaatgttgttctgaaataattgttttccaaatcttgcaaacacatttacaaatgagaagagacttgatgtgaag 8547140  T
Q  138 ttgaagaaaaatgtgggtggtgaggtgggatggaagaatatcaaaataa---caacat---tcatgactttctgcctcctcaactttcccttttgcttta 231  Q
    || ||| | ||||||||  |||||||| ||||||||| |||||||||||   |||  |   |||||| | |||||||| |||||||| |||||| |||||    
T  8547139 tttaagcagaatgtgggcagtgaggtgagatggaagattatcaaaataagggcaaagttcatcatgattgtctgcctcatcaacttttcctttttcttta 8547040  T
Q  232 ttgcatcttcggctagccctaacagggataattgaaccctcttttctt 279  Q
    ||||||||||  |||||||||||||||  ||||||| ||| |||||||    
T  8547039 ttgcatcttcttctagccctaacaggggcaattgaatccttttttctt 8546992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 19 - 279
Target Start/End: Original strand, 8536486 - 8536749
Alignment:
Q  19 cgaatcatgagactaatgggtgatcgctcaaagtgtaatttagcaaaatgtggttctgaaatcattgctttccaaattttgcacacacatttacatatga 118  Q
    |||||||||||||| |  |||||| ||||||||||  ||||||||||||||| ||||||||||| || ||||||||||||||||||| ||||||| ||||    
T  8536486 cgaatcatgagactgagtggtgattgctcaaagtgggatttagcaaaatgtgattctgaaatcaatgttttccaaattttgcacacagatttacaaatga 8536585  T
Q  119 gaagagacttgataggaagttgaagaaaaatgtgggtggtgaggtgggatggaagaatatcaaaataa---caacattcatgactttctgcctcctcaac 215  Q
    |||| ||||| |  ||||||||||| | |||||| |   | | ||| || |||||| |||||||||||   |||  || ||| ||||||||||| |||||    
T  8536586 gaagcgacttaaatggaagttgaagcagaatgtgagcaataacgtgagacggaagattatcaaaataagggcaaagttgatggctttctgcctcatcaac 8536685  T
Q  216 tttcccttttgctttattgcatcttcggctagccctaacagggataattgaaccctcttttctt 279  Q
    ||||||||||| |||||||| |||| ||| ||||||| |||||  ||||||||| | |||||||    
T  8536686 tttcccttttgatttattgcgtctttggccagccctagcaggggcaattgaacctttttttctt 8536749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 183
Target Start/End: Complemental strand, 1599421 - 1599257
Alignment:
Q  19 cgaatcatgagactaatgggtgatcgctcaaagtgtaatttagcaaaatgtggttctgaaatcattgctttccaaattttgcacacacatttacatatga 118  Q
    ||||||||||||||||  |||||||||||||||||  ||||||||||||||| ||||||||||| || ||||||||||||||||||| ||||||| ||||    
T  1599421 cgaatcatgagactaagtggtgatcgctcaaagtgcgatttagcaaaatgtgattctgaaatcaatgttttccaaattttgcacacagatttacaaatga 1599322  T
Q  119 gaagagacttgataggaagttgaagaaaaatgtgggtggtgaggtgggatggaagaatatcaaaa 183  Q
    |||| ||||| |||||||||||||| | |||| |||  |||| ||| |||| |||| ||||||||    
T  1599321 gaagcgacttaataggaagttgaagcagaatgcgggcagtgacgtgagatgaaagattatcaaaa 1599257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 186
Target Start/End: Original strand, 8529913 - 8530083
Alignment:
Q  16 gttcgaatcatgagactaatgggtgatcgctcaaagtgtaatttagcaaaatgtggttctgaaatcattgctttccaaattttgcacacacatttacata 115  Q
    |||||||||||||||||||| |||||||||||||||||  |||||||||| |||| ||||||||| |||| |||||||| |||||||||||||||||| |    
T  8529913 gttcgaatcatgagactaattggtgatcgctcaaagtgcgatttagcaaattgtgattctgaaataattgttttccaaactttgcacacacatttacaaa 8530012  T
Q  116 tgagaagagacttgataggaagttgaagaaaaatgtgggtggtgaggtgggatggaagaatatcaaaataa 186  Q
    |||||| |||||| |  |||||| |||| | ||||||||  |||||||| || |||||  |||||||||||    
T  8530013 tgagaacagacttaaatggaagtcgaaggagaatgtgggcagtgaggtgagacggaagtttatcaaaataa 8530083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 182
Target Start/End: Complemental strand, 2873659 - 2873494
Alignment:
Q  17 ttcgaatcatgagactaatgggtgatcgctcaaagtgtaatttagcaaaatgtggttctgaaatcattgctttccaaattttgcacacacatttacatat 116  Q
    ||||||||| || |||||  |||| ||||||||| || |||||||||||||||||||||||||| | ||  |||||| |||||||||||||| |||| ||    
T  2873659 ttcgaatcacgaaactaactggtgctcgctcaaattgcaatttagcaaaatgtggttctgaaataagtgtattccaagttttgcacacacatctacacat 2873560  T
Q  117 gagaagagacttgataggaagttgaagaaaaatgtgggtggtgaggtgggatggaagaatatcaaa 182  Q
    |||||||||||| || ||||||||||||| ||||||||| || | ||| ||||||||| |||||||    
T  2873559 gagaagagacttaatgggaagttgaagaagaatgtgggtagttaagtgagatggaagattatcaaa 2873494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 19 - 182
Target Start/End: Original strand, 8678723 - 8678886
Alignment:
Q  19 cgaatcatgagactaatgggtgatcgctcaaagtgtaatttagcaaaatgtggttctgaaatcattgctttccaaattttgcacacacatttacatatga 118  Q
    ||||||||||||| ||   |||||||||||||||  |||||||||||||||||||||||||| | || ||||||||| ||||||||||||||||| ||||    
T  8678723 cgaatcatgagacaaacttgtgatcgctcaaagttcaatttagcaaaatgtggttctgaaataagtgttttccaaatcttgcacacacatttacaaatga 8678822  T
Q  119 gaagagacttgataggaagttgaagaaaaatgtgggtggtgaggtgggatggaagaatatcaaa 182  Q
    ||||||| || || ||||| ||||| ||||||||||   ||| ||| ||||||||| |||||||    
T  8678823 gaagagatttaatgggaagatgaagcaaaatgtgggcaatgatgtgtgatggaagattatcaaa 8678886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 182
Target Start/End: Original strand, 8645215 - 8645378
Alignment:
Q  19 cgaatcatgagactaatgggtgatcgctcaaagtgtaatttagcaaaatgtggttctgaaatcattgctttccaaattttgcacacacatttacatatga 118  Q
    ||||||||||||| ||   |||||||||||||||  |||||||||||||||||||||||||| | || ||||||||| ||||||||||||| ||| ||||    
T  8645215 cgaatcatgagacaaacttgtgatcgctcaaagttcaatttagcaaaatgtggttctgaaataagtgttttccaaatcttgcacacacattcacaaatga 8645314  T
Q  119 gaagagacttgataggaagttgaagaaaaatgtgggtggtgaggtgggatggaagaatatcaaa 182  Q
    ||||||| || || ||||| ||||| || |||||||   ||| ||| ||||||||| |||||||    
T  8645315 gaagagatttaatgggaagatgaagcaacatgtgggcaatgatgtgtgatggaagattatcaaa 8645378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 183
Target Start/End: Complemental strand, 9073853 - 9073689
Alignment:
Q  19 cgaatcatgagactaatgggtgatcgctcaaagtgtaatttagcaaaatgtggttctgaaatcattgctttccaaattttgcacacacatttacatatga 118  Q
    |||||||| | |||||  |||| ||||||||| || |||||||||||||||||||||||||| | |  ||||||||||||||||||||||||||| ||||    
T  9073853 cgaatcataaaactaagtggtgctcgctcaaattgcaatttagcaaaatgtggttctgaaataagtcttttccaaattttgcacacacatttacaaatga 9073754  T
Q  119 gaagagacttgataggaagttgaagaaaaatgtgggtggtgaggtgggatggaagaatatcaaaa 183  Q
    |||||| |||||  |||||| |||| | ||| | ||  |||||||| ||||||||| | ||||||    
T  9073753 gaagaggcttgacgggaagtcgaagcagaatattggcagtgaggtgagatggaagattgtcaaaa 9073689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 17 - 182
Target Start/End: Complemental strand, 2844213 - 2844048
Alignment:
Q  17 ttcgaatcatgagactaatgggtgatcgctcaaagtgtaatttagcaaaatgtggttctgaaatcattgctttccaaattttgcacacacatttacatat 116  Q
    ||||||||| || |||||  |||| ||||||||| || ||||||||||||||||||||||| || | ||  ||||||||||||||||||||| |||||||    
T  2844213 ttcgaatcacgaaactaactggtgctcgctcaaattgcaatttagcaaaatgtggttctgatataagtgtattccaaattttgcacacacatctacatat 2844114  T
Q  117 gagaagagacttgataggaagttgaagaaaaatgtgggtggtgaggtgggatggaagaatatcaaa 182  Q
    |||||||||||| || ||||| |  || | ||||||||| || |  || ||||||||| |||||||    
T  2844113 gagaagagacttaatgggaagctttaggagaatgtgggtagttaattgagatggaagattatcaaa 2844048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 2856046 - 2855926
Alignment:
Q  17 ttcgaatcatgagactaatgggtgatcgctcaaagtgtaatttagcaaaatgtggttctgaaatcattgctttccaaattttgcacacacatttacatat 116  Q
    ||||||||| || |||||  |||| ||||||||| || ||||||||||||||||||||||| || | ||  ||||||||||||||||||||| |||||||    
T  2856046 ttcgaatcacgaaactaactggtgctcgctcaaattgcaatttagcaaaatgtggttctgatataagtgtattccaaattttgcacacacatctacatat 2855947  T
Q  117 gagaagagacttgataggaag 137  Q
    |||||||||||| || |||||    
T  2855946 gagaagagacttaatgggaag 2855926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 21 - 137
Target Start/End: Complemental strand, 2904161 - 2904045
Alignment:
Q  21 aatcatgagactaatgggtgatcgctcaaagtgtaatttagcaaaatgtggttctgaaatcattgctttccaaattttgcacacacatttacatatgaga 120  Q
    |||||||| ||| || |||| ||||||||| || |||||||| || |  ||||||||||| | ||  ||||||||||||||||||||| |||||||||||    
T  2904161 aatcatgaaactgattggtgctcgctcaaattgcaatttagcgaatttaggttctgaaataagtgtattccaaattttgcacacacatctacatatgaga 2904062  T
Q  121 agagacttgataggaag 137  Q
    |||||||| || |||||    
T  2904061 agagacttaatgggaag 2904045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 37 - 157
Target Start/End: Complemental strand, 31807273 - 31807153
Alignment:
Q  37 ggtgatcgctcaaagtgtaatttagcaaaatgtggttctgaaatcattgctttccaaattttgcacacacatttacatatgagaagagacttgataggaa 136  Q
    ||||||||||||||||| | ||| ||||||||||| || ||||||| ||  |||||  || | || |||||||||||||||| || ||||||||| ||||    
T  31807273 ggtgatcgctcaaagtgcactttggcaaaatgtgggtcagaaatcactgtgttccatgttctacaaacacatttacatatgataacagacttgatgggaa 31807174  T
Q  137 gttgaagaaaaatgtgggtgg 157  Q
    || |||| | ||||| |||||    
T  31807173 gtcgaagtagaatgtcggtgg 31807153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 8678903 - 8678943
Alignment:
Q  211 tcaactttcccttttgctttattgcatcttcggctagccct 251  Q
    |||||| |||||||||||||||||| |||| ||||||||||    
T  8678903 tcaactctcccttttgctttattgcttcttaggctagccct 8678943  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 11353671 - 11353619
Alignment:
Q  61 gcaaaatgtggttctgaaatcattgctttccaaattttgcacacacatttaca 113  Q
    ||||||| |||||||||||||| ||| |||||  ||||||| |||||||||||    
T  11353671 gcaaaatatggttctgaaatcagtgcattccatgttttgcaaacacatttaca 11353619  T

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Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 11373722 - 11373774
Alignment:
Q  61 gcaaaatgtggttctgaaatcattgctttccaaattttgcacacacatttaca 113  Q
    ||||||| |||||||||||||| ||| |||||  ||||||| |||||||||||    
T  11373722 gcaaaatatggttctgaaatcagtgcattccatgttttgcaaacacatttaca 11373774  T

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Target: chr7 (Bit Score: 94; Significance: 6e-46; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 19 - 247
Target Start/End: Original strand, 35780826 - 35781057
Alignment:
Q  19 cgaatcatgagactaatgggtgatcgctcaaagtgtaatttagcaaaatgtggttctgaaatcattgctttccaaattttgcacacacatttacatatga 118  Q
    |||| |||||||||| | |||||| |||||||||| ||||||||||| || |||||||||||||||| ||| || ||| ||||||||||| |||| ||||    
T  35780826 cgaaccatgagactagttggtgatagctcaaagtgcaatttagcaaattgcggttctgaaatcattgtttttcagattatgcacacacatctacaaatga 35780925  T
Q  119 gaagagacttgataggaagttgaagaaaaatgtgggtggtgaggtgggatggaagaatatcaaaataa---caacattcatgactttctgcctcctcaac 215  Q
    ||||||| || || ||||||||||| |||||||||| ||||||||||||||||||| |||||||||||    ||   |||| |||||||||||| |||||    
T  35780926 gaagagattttatgggaagttgaagcaaaatgtgggcggtgaggtgggatggaagattatcaaaataagggtaaaggtcatcactttctgcctcttcaac 35781025  T
Q  216 tttcccttttgctttattgcatcttcggctag 247  Q
    ||| |  ||||||| |||| ||||| ||||||    
T  35781026 tttacagtttgcttcattgtatctttggctag 35781057  T

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Target: chr7; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 186
Target Start/End: Complemental strand, 48360974 - 48360807
Alignment:
Q  19 cgaatcatgagactaatgggtgatcgctcaaagtgtaatttagcaaaatgtggttctgaaatcattgctttccaaattttgcacacacatttacatatga 118  Q
    ||||||||||||||||  |||||||||||||||||  |||||||||| |||| ||||||||||| || ||||||||||||||||||| ||||||| || |    
T  48360974 cgaatcatgagactaagtggtgatcgctcaaagtgcgatttagcaaattgtgattctgaaatcagtgttttccaaattttgcacacagatttacaaataa 48360875  T
Q  119 gaagagacttgataggaagttgaagaaaaatgtgggtggtgaggtgggatggaagaatatcaaaataa 186  Q
    |||||||||| || ||||||||||| | ||||||||  ||||||||  |||||||| |||||||||||    
T  48360874 gaagagacttaatgggaagttgaaggagaatgtgggcagtgaggtgatatggaagattatcaaaataa 48360807  T

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Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 15 - 186
Target Start/End: Original strand, 9444073 - 9444244
Alignment:
Q  15 tgttcgaatcatgagactaatgggtgatcgctcaaagtgtaatttagcaaaatgtggttctgaaatcattgctttccaaattttgcacacacatttacat 114  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||| |||||||||||||| |||||||| |||||||||| |||||||     
T  9444073 tgttcgaatcatgagactaattggtgatcgctcaaagtgcaatttagcaaattgtgattctgaaatcattgttttccaaactttgcacacagatttacaa 9444172  T
Q  115 atgagaagagacttgataggaagttgaagaaaaatgtgggtggtgaggtgggatggaagaatatcaaaataa 186  Q
    ||||||| |||||| |  |||||| |||| | ||||||||  |||||||| || |||||| |||||||||||    
T  9444173 atgagaacagacttaaatggaagtcgaaggagaatgtgggcagtgaggtgagacggaagattatcaaaataa 9444244  T

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Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 133 - 252
Target Start/End: Original strand, 5131603 - 5131725
Alignment:
Q  133 ggaagttgaagaaaaatgtgggtggtgaggtgggatggaagaatatcaaaataa---caacattcatgactttctgcctcctcaactttcccttttgctt 229  Q
    ||||||| ||| ||||||||||  |||||||| ||||||||| |||||||||||   |||||| ||| ||||| |||| | ||| |||||||||||||||    
T  5131603 ggaagtttaagcaaaatgtgggcagtgaggtgtgatggaagattatcaaaataagggcaacatgcattactttttgccccttcatctttcccttttgctt 5131702  T
Q  230 tattgcatcttcggctagcccta 252  Q
     ||||| |||| |||||||||||    
T  5131703 cattgcctctttggctagcccta 5131725  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 143
Target Start/End: Complemental strand, 25290765 - 25290659
Alignment:
Q  37 ggtgatcgctcaaagtgtaatttagcaaaatgtggttctgaaatcattgctttccaaattttgcacacacatttacatatgagaagagacttgataggaa 136  Q
    ||||| ||||||||||| | ||| ||||||||||| |||||||||| ||  |||||  || | || ||||||||||||| ||||| ||||||||| ||||    
T  25290765 ggtgaccgctcaaagtgcactttggcaaaatgtggatctgaaatcactgtgttccatgttctacaaacacatttacatacgagaacagacttgatgggaa 25290666  T
Q  137 gttgaag 143  Q
    || ||||    
T  25290665 gtcgaag 25290659  T

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