View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19230_high_23 (Length: 249)
Name: NF19230_high_23
Description: NF19230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19230_high_23 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 5558175 - 5558387
Alignment:
| Q |
18 |
ttttgcttaatgtgctttttaattgcatcaatcaagatcttgtcaacgacttgtccattaacttgagcattgaaagacgttgatgttgataacttgacat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5558175 |
ttttgcttaatgtgctttttaattgcatcaatcaagatcttgtcaacgacttgtccattagcttgagcattgaaagacgttgatgttgataacttgacat |
5558274 |
T |
|
| Q |
118 |
cttaatgtgttttctagcctctaatctcatggtattttgggctaattcaagttgtgttcaagtttagaaacagtttctagcctccaatctcatggttcta |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5558275 |
cttaatgtgttttctagcctctaatctcatg-------------------gttgtgttcaagtttagaaacagtttctagcctccaatctcatggttcta |
5558355 |
T |
|
| Q |
218 |
atgcattagtgttcaagtttcgaaaaatgcat |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
5558356 |
atgcattagtgttcaagtttcgaaaaatgcat |
5558387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University