View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19230_high_28 (Length: 233)
Name: NF19230_high_28
Description: NF19230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19230_high_28 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 38 - 217
Target Start/End: Original strand, 3393766 - 3393945
Alignment:
| Q |
38 |
gtctccatcagaagagcgagttcgtggagacaataataagagtcacaataacgaggagagaagacggtaacaccaaccttacaaccaataattgctttat |
137 |
Q |
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| T |
3393766 |
gtctccatcagaagagcgagttcgtggagacaataataagagtcacaataacgaggagagaacacggtaacaccaaccttacaaccaataattgctttat |
3393865 |
T |
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| Q |
138 |
cgatatgatgaaatagtttgtctcctggtttcatgttcatactgtccaaaaacgatctcactcccatgtttgttaaatct |
217 |
Q |
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| T |
3393866 |
cgatatgatgaaatagtttgtctcctggtttcatgttcatactgtccaaaaacgatctcactcccatgtttgttaaatct |
3393945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 38 - 217
Target Start/End: Original strand, 3387250 - 3387429
Alignment:
| Q |
38 |
gtctccatcagaagagcgagttcgtggagacaataataagagtcacaataacgaggagagaagacggtaacaccaaccttacaaccaataattgctttat |
137 |
Q |
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| T |
3387250 |
gtctccatgagaagagcgagttcatggagacaataataagagtcgcaataattaggagagaagacaacaacaccaaccttacaatcaaaaatggctttgt |
3387349 |
T |
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| Q |
138 |
cgatatgatgaaatagtttgtctcctggtttcatgttcatactgtccaaaaacgatctcactcccatgtttgttaaatct |
217 |
Q |
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| T |
3387350 |
cgatattaggactgagtttgtcccctagtttcatgttcttacagtccaaaaacgatctcactcccatacttgttaaatct |
3387429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 41 - 204
Target Start/End: Complemental strand, 35761698 - 35761535
Alignment:
| Q |
41 |
tccatcagaagagcgagttcgtggagacaataataagagtcacaataacgaggagagaagacggtaacaccaaccttacaaccaataattgctttatcga |
140 |
Q |
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| T |
35761698 |
tccatgagaagagcaagctcatggagacaaaaataagagtcacaataagttggagaaaacacagcaacaccaactttgcaacctagaattcctttatcaa |
35761599 |
T |
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| Q |
141 |
tatgatgaaatagtttgtctcctggtttcatgttcatactgtccaaaaacgatctcactcccat |
204 |
Q |
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| T |
35761598 |
tatgatcaaacaacctatctccaggtttcatattcttgctatccaaaaatgatctcactcccat |
35761535 |
T |
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