View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19230_high_4 (Length: 575)
Name: NF19230_high_4
Description: NF19230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19230_high_4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 1 - 575
Target Start/End: Complemental strand, 35745609 - 35745023
Alignment:
| Q |
1 |
aaagacaagacatgcagaagatgttggaagtctagcattacctatctatctgagatatcctaggcactattaattgatattatataagcacttgcaggga |
100 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35745609 |
aaagacaagacatgcagaagatgttggaagcttagcattacctatctatctgagatatcctaggcactattaattgatattatataagcacttgcaggga |
35745510 |
T |
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| Q |
101 |
ctgaaagtgataaaaggctctagcacacctaagaagtctt------------------caaaggctcagagcaaagaaaatggagagtcaatggagttat |
182 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
35745509 |
ctgaaagtgataaaaggctctagcacacctaagaagtcttgcacacctaagaagtcttcaaaggctcagagcaaagaaaatggagagtcaatggagttat |
35745410 |
T |
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| Q |
183 |
cattcgtaggagcagaccaattgattttaatggtagagattcatacaaagatcatggcattcagagatatcatggacttagctccatgtaacagttctgc |
282 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35745409 |
cattcgtaggagcagaccaattgattttaatggtagagattcatatgaagatcatggcattcagagatatcatggacttagctccatgtaacagttctgc |
35745310 |
T |
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| Q |
283 |
ttccttgcgcgaggtatgtgacataataagagtttaacttcgtaacattaagtgacagatttcagtttcctgatctgttgtaaaatgacaatcattattc |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
35745309 |
ttccttgcgcgaggtatgtgacataataagagtttaacttcgtaacattaagtgacagatttcagtttcc---tctgttgtaaaatgacaatcattattc |
35745213 |
T |
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| Q |
383 |
ttggnnnnnnnnnnnnnnnatatgtcacattgcagatagttatgagaacactgaatgatctacaaaggctatatccagagatcataacaaaaactcaact |
482 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
35745212 |
ttgg---ttttttttttttatatgtcacattgcagatagttatgagaacactgaatgatctacaaaggctatatccagagatcataacaaaaactcaagt |
35745116 |
T |
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| Q |
483 |
gtcaaagattgaggacaagtctattgatcaggtaattatagtttcaacattaaataagctgcacctgaaatgaaattattctaattatgataa |
575 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35745115 |
gtcaaagattgaggacaagtctattgatcaggtaattatagtttcaacattaaataagctgcacctgaaatgaaattattctaattatgataa |
35745023 |
T |
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