View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19230_high_7 (Length: 450)
Name: NF19230_high_7
Description: NF19230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19230_high_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-143; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 146 - 411
Target Start/End: Complemental strand, 48568909 - 48568644
Alignment:
| Q |
146 |
cgcagcaattatgtcaagacaagttcagttctttaaaaaactaacagggattaaggaaatggcctaattaatttgtctagcaaaattgactgaaataata |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48568909 |
cgcagcaattatgtcaagacaagttcagttctttaaaaaactaacagggattaaggaaatggcctaattaatttgtctagcaaaattgactgaaataata |
48568810 |
T |
|
| Q |
246 |
ttagcgttgactattatctaggagacaagatgaggaatggccttccgcctgctcttgcataagtgtatttccaagttagaactgacacatgtatagcatt |
345 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
48568809 |
ttagcgttgactattatctaggagacaagatgaggaatggccttccgcctgctcttgcataagtgtatttccaagttaaaactgacacatgtatagcatt |
48568710 |
T |
|
| Q |
346 |
tctaagaagacatccttaaatactgaaggatacatgaaaaattaaacttaaatatcttgataacaa |
411 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48568709 |
tctaagaatacatccttaaatactgaaggatacatgaaaaattaaacttaaatatcttgataacaa |
48568644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 48569080 - 48568936
Alignment:
| Q |
1 |
tgtttaccttacgcatggtttcctctgattcataaggtttctctggaaaatgccacacaggtttcccgctcggagccccataggtatctccatagagaag |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48569080 |
tgttcaccttacgcatggtttcctctgattcataaggtttctctggaaaatgccacacaggtttcccgctcggagccccataggtatctccatagagaag |
48568981 |
T |
|
| Q |
101 |
aaggtagagtcttctgtc--gagctctttgcagtgacctaaagaa |
143 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
48568980 |
aaggtagagtcttctgtcaagagctctttgcagtgacctaaagaa |
48568936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 409 - 450
Target Start/End: Complemental strand, 48568587 - 48568546
Alignment:
| Q |
409 |
caatagaaaaggtaagtgaatatataacaagctaaataaccc |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48568587 |
caatagaaaaggtaagtgaatatataacaagctaaataaccc |
48568546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 8e-28; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 10822205 - 10822347
Alignment:
| Q |
1 |
tgtttaccttacgcatggtttcctctgattcataaggtttctctggaaaatgccacacaggtttcccgctcggagccccataggtatctccatagagaag |
100 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||| ||| |||||||||||||||||||| || || || ||||||||||| | ||| ||| ||||||| |
|
|
| T |
10822205 |
tgttcaccttacgcatagtttcctctgattcatatactttttctggaaaatgccacacaggctttccacttggagccccataagcatcaccaaagagaag |
10822304 |
T |
|
| Q |
101 |
aaggtagagtcttctgtc--gagctctttgcagtgacctaaag |
141 |
Q |
| |
|
|||||| ||||||||||| |||| ||||| |||||||||||| |
|
|
| T |
10822305 |
aaggtaaagtcttctgtcaagagccctttgtagtgacctaaag |
10822347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 36145191 - 36145048
Alignment:
| Q |
1 |
tgtttaccttacgcatggtttcctctgattcataaggtttctctggaaaatgccacacaggtttcccgctcggagccccataggtatctccatagagaag |
100 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||| ||| |||||||||||||||||||| || || || ||||||||||| | ||| ||| ||||||| |
|
|
| T |
36145191 |
tgttcaccttacgcatggtatcctctgattcatatactttttctggaaaatgccacacaggctttccacttggagccccataagcatcaccaaagagaag |
36145092 |
T |
|
| Q |
101 |
aaggtagagtcttctgtc--gagctctttgcagtgacctaaaga |
142 |
Q |
| |
|
|||||| |||||||| || |||| ||||| ||||||||||||| |
|
|
| T |
36145091 |
aaggtaaagtcttctatcaagagccctttgtagtgacctaaaga |
36145048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University