View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19230_low_10 (Length: 371)

Name: NF19230_low_10
Description: NF19230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19230_low_10
NF19230_low_10
[»] chr1 (5 HSPs)
chr1 (1-139)||(9650725-9650862)
chr1 (7-139)||(9648460-9648591)
chr1 (73-139)||(35963849-35963914)
chr1 (73-130)||(35964904-35964961)
chr1 (243-305)||(6430123-6430184)
[»] chr7 (6 HSPs)
chr7 (1-139)||(40697246-40697383)
chr7 (35-137)||(40698354-40698455)
chr7 (2-139)||(15317372-15317508)
chr7 (89-137)||(15319943-15319991)
chr7 (89-139)||(15320022-15320070)
chr7 (1-47)||(15319869-15319915)
[»] chr3 (1 HSPs)
chr3 (1-139)||(33094882-33095022)
[»] chr8 (3 HSPs)
chr8 (1-137)||(45051781-45051911)
chr8 (101-139)||(23930637-23930675)
chr8 (2-55)||(26625244-26625297)


Alignment Details
Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 9650725 - 9650862
Alignment:
Q  1 ggatcattggatgatggtggatttcttgaagttgttgacttgtctttaaaagagccacttttataggctgatttttctcaatgtggagtgactaggatat 100  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||||| |  ||| |  |||| ||||||||||| |||||||||||||||| |||||||    
T  9650725 ggatcattggatgatagtggatttcttgaagttgttgatttgtctttagattagctaggtttagaggctgatttt-ctcaatgtggagtgacaaggatat 9650823  T
Q  101 gattttatcattttgttttagaatatttttcgtaattga 139  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  9650824 gattttatcattttgttttagaatatttttcataattga 9650862  T

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Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 7 - 139
Target Start/End: Complemental strand, 9648591 - 9648460
Alignment:
Q  7 ttggatgatggtggatttcttgaagttgttgacttgtctttaaaagagccacttttataggctgatttttctcaatgtggagtgactaggatatgatttt 106  Q
    ||||||||| ||||||||||||| |||| ||||||||||||| | |||| ||  ||| ||||||||||| |||||||| |||||||||||||||||||||    
T  9648591 ttggatgatagtggatttcttgatgttgctgacttgtctttacatgagctacgcttagaggctgatttt-ctcaatgtagagtgactaggatatgatttt 9648493  T
Q  107 atcattttgttttagaatatttttcgtaattga 139  Q
    || ||||||||||| ||||||||| ||||||||    
T  9648492 attattttgttttaaaatattttttgtaattga 9648460  T

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Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 73 - 139
Target Start/End: Complemental strand, 35963914 - 35963849
Alignment:
Q  73 ttttctcaatgtggagtgactaggatatgattttatcattttgttttagaatatttttcgtaattga 139  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  35963914 ttttctcaatgtggaatgactaggatatgattt-atcattttgttttagaatatttttcgtaattga 35963849  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 73 - 130
Target Start/End: Original strand, 35964904 - 35964961
Alignment:
Q  73 ttttctcaatgtggagtgactaggatatgattttatcattttgttttagaatattttt 130  Q
    |||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  35964904 ttttctgaatgtggagtgactaggatatgatttgatcattttgttgtagaatattttt 35964961  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 305
Target Start/End: Complemental strand, 6430184 - 6430123
Alignment:
Q  243 cacttcattaaggaaaagtttgacagtggttttgataactacgacttacattctttttaggca 305  Q
    ||||||||||| |||||||| |||||||| |||||||||||| || |||||||||||| ||||    
T  6430184 cacttcattaaagaaaagttggacagtgg-tttgataactacaacatacattcttttttggca 6430123  T

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Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 40697383 - 40697246
Alignment:
Q  1 ggatcattggatgatggtggatttcttgaagttgttgacttgtctttaaaagagccacttttataggctgatttttctcaatgtggagtgactaggatat 100  Q
    |||||||| |||||| ||||||||| |||||||| |||||||| |||| | |||| |   ||| ||||||||||| ||||||||||||||||||||||||    
T  40697383 ggatcattagatgatagtggatttcctgaagttgctgacttgt-tttagatgagctaggcttagaggctgatttt-ctcaatgtggagtgactaggatat 40697286  T
Q  101 ga-ttttatcattttgttttagaatatttttcgtaattga 139  Q
     | |||| |||||||||||||||||||||||| |||||||    
T  40697285 aatttttttcattttgttttagaatatttttcataattga 40697246  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 35 - 137
Target Start/End: Original strand, 40698354 - 40698455
Alignment:
Q  35 ttgacttgtctttaaaagagccacttttataggctgatttttctcaatgtggagtgactaggatatgattttatcattttgttttagaatatttttcgta 134  Q
    |||||||||||||| | |||| |   ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||    
T  40698354 ttgacttgtctttagatgagctaggcttagaggctgatttt-ctcaatgtggagtgactaggatatgattttatcattttgttttaaaatattttttgta 40698452  T
Q  135 att 137  Q
    |||    
T  40698453 att 40698455  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 139
Target Start/End: Complemental strand, 15317508 - 15317372
Alignment:
Q  2 gatcattggatgatggtggatttcttgaagttgttgacttgtctttaaaagagccacttttataggctgatttttctcaatgtggagtgactaggatatg 101  Q
    ||||||||||| || |||||||||||||||||| ||| ||||||||| | || |||   ||| | | || |||| |||||| || |||||||||||||||    
T  15317508 gatcattggatcatagtggatttcttgaagttgctgaattgtctttagatgaaccaggattagatgttggtttt-ctcaatatgtagtgactaggatatg 15317410  T
Q  102 attttatcattttgttttagaatatttttcgtaattga 139  Q
    ||||| | | |||||||| |||||||||||||||||||    
T  15317409 atttttttaatttgttttcgaatatttttcgtaattga 15317372  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 89 - 137
Target Start/End: Original strand, 15319943 - 15319991
Alignment:
Q  89 tgactaggatatgattttatcattttgttttagaatatttttcgtaatt 137  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  15319943 tgactaggatatgattttatcattttgttttaggatacttttcgtaatt 15319991  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 89 - 139
Target Start/End: Original strand, 15320022 - 15320070
Alignment:
Q  89 tgactaggatatgattttatcattttgttttagaatatttttcgtaattga 139  Q
    ||||||||||||||||||||||  ||||||||| |||||||||||||||||    
T  15320022 tgactaggatatgattttatca--ttgttttaggatatttttcgtaattga 15320070  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 15319869 - 15319915
Alignment:
Q  1 ggatcattggatgatggtggatttcttgaagttgttgacttgtcttt 47  Q
    ||||||||||||||| |||||||||||||||||| ||| || |||||    
T  15319869 ggatcattggatgatagtggatttcttgaagttgctgatttctcttt 15319915  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 33095022 - 33094882
Alignment:
Q  1 ggatcattggatgatggtggatttcttgaagttgttgacttgtctttaaaagagccacttttataggctgatttttctcaatgtggagtgactaggatat 100  Q
    ||||||||||||||| ||| ||||||||||||| ||| || ||||||| | ||| |||  |||  || ||| |||||||| | | ||||||||||||| |    
T  33095022 ggatcattggatgatcgtgaatttcttgaagttattggctcgtctttagatgagacacgattaatggttga-ttttctcattatagagtgactaggatgt 33094924  T
Q  101 gattttatcattttgtt---ttagaatatttttcgtaattga 139  Q
    ||||||||||||||| |   ||||||||||||||||||||||    
T  33094923 gattttatcattttgattaattagaatatttttcgtaattga 33094882  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 45051911 - 45051781
Alignment:
Q  1 ggatcattggatgatggtggatttcttgaagttgttgacttgtctttaaaagagccacttttataggctgatttttctcaatgtggagtgactaggatat 100  Q
    ||||||| |||||||  || |||||||||||||||| ||||||||||| | |||  |   ||| ||||||||||| |||     |||||| | |||||||    
T  45051911 ggatcatcggatgataatgaatttcttgaagttgtttacttgtctttagatgagttagacttagaggctgatttt-ctc-----ggagtggcaaggatat 45051818  T
Q  101 gattttatcattttgttttagaatatttttcgtaatt 137  Q
    ||||||||||||||| |||| |||||||||| |||||    
T  45051817 gattttatcattttgctttacaatatttttcctaatt 45051781  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 139
Target Start/End: Original strand, 23930637 - 23930675
Alignment:
Q  101 gattttatcattttgttttagaatatttttcgtaattga 139  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  23930637 gattttatcattttgttttaaaatatttttcgtaattga 23930675  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 26625297 - 26625244
Alignment:
Q  2 gatcattggatgatggtggatttcttgaagttgttgacttgtctttaaaagagc 55  Q
    ||||||| |||||| |||||||| ||||||||| | ||||||||||||| ||||    
T  26625297 gatcatttgatgatagtggattttttgaagttgctaacttgtctttaaatgagc 26625244  T

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