View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19230_low_12 (Length: 348)
Name: NF19230_low_12
Description: NF19230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19230_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 310; Significance: 1e-174; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 10 - 331
Target Start/End: Original strand, 35900362 - 35900683
Alignment:
| Q |
10 |
attattcttaattatgatatacaccttttaaaatcaatgtaaaaagcatctagtccaagggagaaagattctggtcatatttggcattaattaactctac |
109 |
Q |
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| T |
35900362 |
attattcttaactatgatatacaccttttaaaatcaatgtaaaaaacatctagtccaagggagaaagattctggtcatatttggcattaattaactctac |
35900461 |
T |
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| Q |
110 |
ttttggctagcagtacaaatcttttaggctcattatgttaaaatgatgatgttttcggtgtttgatttatcttgaactaaagatggatttcatttctaat |
209 |
Q |
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| T |
35900462 |
ttttggctagcagtacaaatcttttaggctcattatgttaaaatgatgatgttttcggtgtttgatttatcttgaactaaagatggatttcatttctaat |
35900561 |
T |
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| Q |
210 |
ttgaagcttatgttagttcactggttctattattttatggtattataaaattagtaaagggtcagagtgaaaaccttatctacttgaatatgtaaaatgt |
309 |
Q |
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| T |
35900562 |
ttgaagcttatgttagttcactggttgtattattttatggtattataaaattagtaaagggtcagagtgaaaaccttatctacttgaatatgtaaaatgt |
35900661 |
T |
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| Q |
310 |
aagtgtcaatcattgtacatct |
331 |
Q |
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| T |
35900662 |
aagtgtcaatcattgtacatct |
35900683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 154 - 331
Target Start/End: Original strand, 35882821 - 35882999
Alignment:
| Q |
154 |
gatgatgttttcggtgtttgatttatcttgaactaaagatggatttcatttctaatttgaagcttatgttagttcactggttctattattttatggtatt |
253 |
Q |
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| T |
35882821 |
gatgatgttttcactgttcgatttatcttgaactaaagatggatttcatttctaatttgaagcttatgttagttcactggctgtattattttatggtatt |
35882920 |
T |
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| Q |
254 |
ataaaattagtaaagggtcagagtgaaaa-ccttatctacttgaatatgtaaaatgtaagtgtcaatcattgtacatct |
331 |
Q |
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| T |
35882921 |
gtaaaattagtaaaggatcagagtgaaaatctttatctacttgaatacgtataatgtaagtgtcaatcattgtacatct |
35882999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 201 - 330
Target Start/End: Original strand, 33311177 - 33311305
Alignment:
| Q |
201 |
atttctaatttgaagcttatgttagttcactggttctattattttatggtattataaaattagtaaagggtcagagtgaaaacctt-atctacttgaata |
299 |
Q |
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| T |
33311177 |
atttataatttgaagcttatgttggct-actggttgtattattttatggt-ttgtaaaattagtgaaggatcagagtgaaaatctttatctacgtaaata |
33311274 |
T |
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| Q |
300 |
tgtaaaatgtaagtgtcaatcattgtacatc |
330 |
Q |
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| T |
33311275 |
tgtataatgtaagggtcaatcattgtacatc |
33311305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 37 - 119
Target Start/End: Original strand, 35882635 - 35882717
Alignment:
| Q |
37 |
ttaaaatcaatgtaaaaagcatctagtccaagggagaaagattctggtcatatttggcattaattaactctacttttggctag |
119 |
Q |
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| T |
35882635 |
ttaaaatcaatctaaaaagcatctagttcaagggaggaagattctggttatggttggcgttaattagctctacttttggctag |
35882717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 94; Significance: 8e-46; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 141 - 331
Target Start/End: Complemental strand, 10211529 - 10211339
Alignment:
| Q |
141 |
attatgttaaaatgatgatgtttt-cggtgtttgatttatcttgaactaaagatggatttcatttctaatttgaagcttatgttagttcactggttctat |
239 |
Q |
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| T |
10211529 |
attatgttaaa--gatgatgtttttcagtgtttgatttatcttgaaccaaaggtggatttcatttctaatttgaagcttatgttggttcactggttataa |
10211432 |
T |
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| Q |
240 |
tattttatggtattataaaattagtaaagggtcagagtgaaaa-ccttatctacttgaatatgtaaaatgtaagtgtcaatcattgtacatct |
331 |
Q |
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| T |
10211431 |
tgttttatggtagtgtaaaattagtaaataatcagagcgaaaatctttatgtacgtaaatatgtaaaatgtaagtgtcaatcattgtgcatct |
10211339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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