View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19230_low_14 (Length: 319)
Name: NF19230_low_14
Description: NF19230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19230_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 41919288 - 41919595
Alignment:
| Q |
1 |
gaaaatgcaacattgggaaacactaagaaaaattcactctaaaagtgatcaacacattgatcatgcggactctgttgattgggaagcagtaagagatgca |
100 |
Q |
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| T |
41919288 |
gaaaatgcaacattgggaaacactaagaaaaatccactctaaaagtgatcaacacattgatcatgcggactctgttgattgggaagcagtaagagatgca |
41919387 |
T |
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| Q |
101 |
aatgttaatgaagttgctacagctattaaaaagcgtggtcaacaaaacataattgcttataaaattcaggt--------------aaaaaatatttagtt |
186 |
Q |
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| T |
41919388 |
aatgttaatgaagttgctgcagctattaaaaagcgtggtcaacaaaacataattgcttataaaattcaggttagtttgtagttaataataatatata-ta |
41919486 |
T |
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| Q |
187 |
tttaacttttgacatgttattattgagataattataattagtacgtacgtacattatatatttgtaggttgcattgaagggatttatggttaaccatgga |
286 |
Q |
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| T |
41919487 |
tataacttttgacatgttattattgagataattataatta----gtacgtacattatatatttgtaggttgcattgaagggatttatggttaaccatgga |
41919582 |
T |
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| Q |
287 |
agcatgaatttag |
299 |
Q |
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| T |
41919583 |
agcatgaatttag |
41919595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 21 - 188
Target Start/End: Original strand, 1688828 - 1688995
Alignment:
| Q |
21 |
cactaagaaaaattcactctaaaagtgatcaacacattgatcatgcggactctgttgattgggaagcagtaagagatgcaaatgttaatgaagttgctac |
120 |
Q |
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| T |
1688828 |
cactaagaaaaatccacagtagaagtgatcgacacattgaccatgtggattctattgattgggaagcagtaagaaatgccaaagttggtgaagttgctga |
1688927 |
T |
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| Q |
121 |
agctattaaaaagcgtggtcaacaaaacataattgcttataaaattcaggtaaaaaatatttagtttt |
188 |
Q |
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| T |
1688928 |
agctattaaaatgcgtggtcaacataacattattgctaaaaaaatacaggtacaaaatatatagtttt |
1688995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 141
Target Start/End: Original strand, 1305125 - 1305195
Alignment:
| Q |
71 |
tctgttgattgggaagcagtaagagatgcaaatgttaatgaagttgctacagctattaaaaagcgtggtca |
141 |
Q |
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||||||||||||||| | |||||| ||||||| | ||| ||||| |||| |||||||||||| |||||||| |
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| T |
1305125 |
tctgttgattgggaaacggtaagaaatgcaaaagctaaagaagtggctaaagctattaaaaaccgtggtca |
1305195 |
T |
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