View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19230_low_15 (Length: 309)
Name: NF19230_low_15
Description: NF19230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19230_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 291
Target Start/End: Complemental strand, 35745046 - 35744780
Alignment:
| Q |
18 |
atgaaattattctaattatgataattactgaaatcttagcatcctgaaaatctaaatgtggacatttattttatactaggctgtggcctacttctgtgag |
117 |
Q |
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| T |
35745046 |
atgaaattattctaattatgataattactgaaatcttagcatcctgaaaatctaaatgtggacatttattttatactaggctgtggcctacttctgtgag |
35744947 |
T |
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| Q |
118 |
gctttgaagtctcttggagagtcatggatgatggacaatgattgcatggataagcttgatattgcatttccaacatgcaaggatgacaacaacatgcgtc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35744946 |
gctttgaagtctcttggagagtcatggatgatggacaatgattgcatggataagcttgatattgcatttccaacatgcaaggatgacaacaacatgcgtc |
35744847 |
T |
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| Q |
218 |
aattgggtatgttactaatgatcttagatatgcatcaacaatgtaaaaacttcttcttatatatacatcaaaat |
291 |
Q |
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|||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
35744846 |
aattgggtatgttattaatgatct----tatgcatcaacaatgtaaaaa---cttcttatatatacatcaaaat |
35744780 |
T |
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