View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19230_low_16 (Length: 309)

Name: NF19230_low_16
Description: NF19230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19230_low_16
NF19230_low_16
[»] chr4 (3 HSPs)
chr4 (1-296)||(46223944-46224239)
chr4 (7-196)||(19553699-19553884)
chr4 (16-152)||(33116926-33117059)
[»] chr3 (3 HSPs)
chr3 (198-296)||(54587090-54587188)
chr3 (195-296)||(52971900-52971998)
chr3 (195-296)||(6161506-6161607)
[»] chr5 (10 HSPs)
chr5 (195-296)||(34833374-34833475)
chr5 (198-296)||(38966305-38966403)
chr5 (195-296)||(20235656-20235757)
chr5 (195-294)||(13850169-13850268)
chr5 (198-296)||(23351856-23351955)
chr5 (90-178)||(15389624-15389713)
chr5 (231-296)||(31049917-31049982)
chr5 (94-178)||(5813725-5813809)
chr5 (231-296)||(31063001-31063066)
chr5 (243-296)||(31045130-31045183)
[»] chr7 (6 HSPs)
chr7 (198-296)||(15891067-15891165)
chr7 (195-296)||(19216211-19216312)
chr7 (195-278)||(41256921-41257004)
chr7 (76-178)||(20420410-20420513)
chr7 (90-178)||(20438008-20438097)
chr7 (89-160)||(23337725-23337796)
[»] chr1 (6 HSPs)
chr1 (195-296)||(45909976-45910077)
chr1 (195-296)||(44712551-44712652)
chr1 (81-160)||(49484380-49484459)
chr1 (195-296)||(50516015-50516116)
chr1 (211-296)||(16767242-16767327)
chr1 (211-296)||(10548383-10548468)
[»] chr8 (5 HSPs)
chr8 (198-296)||(9139970-9140068)
chr8 (198-296)||(23709978-23710076)
chr8 (7-196)||(2086105-2086290)
chr8 (195-296)||(754759-754859)
chr8 (94-167)||(35122035-35122109)
[»] chr2 (6 HSPs)
chr2 (199-296)||(17311961-17312058)
chr2 (195-293)||(38619931-38620029)
chr2 (219-292)||(19991035-19991108)
chr2 (211-275)||(19990949-19991013)
chr2 (89-143)||(26478148-26478202)
chr2 (211-296)||(10924897-10924982)
[»] scaffold0528 (1 HSPs)
scaffold0528 (231-296)||(11398-11463)
[»] chr6 (1 HSPs)
chr6 (211-277)||(24132649-24132715)


Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 46224239 - 46223944
Alignment:
Q  1 aacactactagtctaaatacccggcgttttctggattaattattatacacaaagttttgtatttgggtacacatataagtatatatccgattgaaataat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  46224239 aacactactagtctaaatacccggcgttttctggattaattattatacacaaagttttgtatttaggtacacatataagtatatatccgattgaaataat 46224140  T
Q  101 ttaaatttataaataaaattcatcaaacaacctaacatattaatagttaaaatcctttaatcaataaatattgacttttgttttgcacttaaataacgtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46224139 ttaaatttataaataaaattcatcaaacaacctaacatattaatagttaaaatcctttaatcaataaatattgacttttgttttgcacttaaataacgtt 46224040  T
Q  201 tgaatccactatctcatgaaggtgaacacattcatttgggtttagacgaccgacaattttatgacctttcaacacatcagtcatgtcatggttgtg 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46224039 tgaatccactatctcatgaaggtgaacacattcatttgggtttagacgaccgacaattttatgacctttcaacacatcagtcatgtcatggttgtg 46223944  T

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Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 196
Target Start/End: Complemental strand, 19553884 - 19553699
Alignment:
Q  7 actagtctaaatacccggcgttttctggattaattattatacacaaagttttgtatttgggtacacatataagtatatatccgattgaaataatttaaat 106  Q
    |||||||||| |||||||| ||  | || |||||||||||| |||||||||||| ||  |  ||| | ||||  ||||||| ||||||||||||||||||    
T  19553884 actagtctaagtacccggcattgcccgggttaattattataaacaaagttttgtgttcag--acaaacataa--atatatcagattgaaataatttaaat 19553789  T
Q  107 ttataaataaaattcatcaaacaacctaacatattaatagttaaaatcctttaatcaataaatattgacttttgttttgcacttaaataa 196  Q
    | ||||||||||||||| ||||||| |||||||||||| |||||||| |||||| ||| ||||||| ||||| ||||  ||| |||||||    
T  19553788 tcataaataaaattcattaaacaacataacatattaatggttaaaattctttaaccaacaaatattaactttagtttcacacctaaataa 19553699  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 152
Target Start/End: Original strand, 33116926 - 33117059
Alignment:
Q  16 aatacccggcgttttctggattaattatt-atacacaaagttttgtatttgggtacacatataagtatatatccgattgaaataatttaaatttataaat 114  Q
    ||||||||||||| || | |||||||||| ||| |||||||||||| || ||| | ||||| |    |||||| |||| |||||||||||||| ||||||    
T  33116926 aatacccggcgttgtccgaattaattatttataaacaaagttttgtgttcgggcaaacataaa----tatatcagattaaaataatttaaattcataaat 33117021  T
Q  115 aaaattcatcaaacaacctaacatattaatagttaaaa 152  Q
    |||||  || || |||| |||||||||||| |||||||    
T  33117022 aaaatctattaatcaacataacatattaatggttaaaa 33117059  T

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Target: chr3 (Bit Score: 79; Significance: 6e-37; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 198 - 296
Target Start/End: Complemental strand, 54587188 - 54587090
Alignment:
Q  198 gtttgaatccactatctcatgaaggtgaacacattcatttgggtttagacgaccgacaattttatgacctttcaacacatcagtcatgtcatggttgtg 296  Q
    |||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  54587188 gtttgaatccaccatctcttgaaggtgaacacgttcatttgggtttagacgaccgacagttttatgacctttcaacacatctgtcatgtcatggttgtg 54587090  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 195 - 296
Target Start/End: Original strand, 52971900 - 52971998
Alignment:
Q  195 aacgtttgaatccactatctcatgaaggtgaacacattcatttgggtttagacgaccgacaattttatgacctttcaacacatcagtcatgtcatggttg 294  Q
    ||||||||||||||| ||||  | ||||||||||| ||||||||||||||||    || |  |||||||||||||||||||||| |||||||||||||||    
T  52971900 aacgtttgaatccaccatcttttcaaggtgaacacgttcatttgggtttagaa---cggcggttttatgacctttcaacacatctgtcatgtcatggttg 52971996  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 195 - 296
Target Start/End: Original strand, 6161506 - 6161607
Alignment:
Q  195 aacgtttgaatccactatctcatgaaggtgaacacattcatttgggtttagacgaccgacaattttatgacctttcaacacatcagtcatgtcatggttg 294  Q
    ||||||||||||||| ||| | | ||| ||||||  |||||||||||||||||||||  |  |||||||||||| ||||||||| |||| ||||||||||    
T  6161506 aacgtttgaatccaccatcacttcaagatgaacaagttcatttgggtttagacgaccaccggttttatgaccttgcaacacatctgtcaagtcatggttg 6161605  T
Q  295 tg 296  Q
    ||    
T  6161606 tg 6161607  T

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Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 195 - 296
Target Start/End: Original strand, 34833374 - 34833475
Alignment:
Q  195 aacgtttgaatccactatctcatgaaggtgaacacattcatttgggtttagacgaccgacaattttatgacctttcaacacatcagtcatgtcatggttg 294  Q
    ||||||||||||||| ||||| | ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  34833374 aacgtttgaatccaccatctcttcaaggtgaacgcgttcatttgggtttagacgaccgacaattttatgacctttcaacacatctgtcatgtcatggttg 34833473  T
Q  295 tg 296  Q
    ||    
T  34833474 tg 34833475  T

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Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 198 - 296
Target Start/End: Complemental strand, 38966403 - 38966305
Alignment:
Q  198 gtttgaatccactatctcatgaaggtgaacacattcatttgggtttagacgaccgacaattttatgacctttcaacacatcagtcatgtcatggttgtg 296  Q
    |||||||||||| ||||| ||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  38966403 gtttgaatccaccatctcttgaaggtgaccacgttcatttgggtttagacgaccgacagttttatgacctttcaacacatctgtcatgtcatggttgtg 38966305  T

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Target: chr5; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 195 - 296
Target Start/End: Original strand, 20235656 - 20235757
Alignment:
Q  195 aacgtttgaatccactatctcatgaaggtgaacacattcatttgggtttagacgaccgacaattttatgacctttcaacacatcagtcatgtcatggttg 294  Q
    ||||||||||||||| ||||| | ||||||||||| ||||||||||||||||||||||||  |||||||||||||||||||||| |||||||||||||||    
T  20235656 aacgtttgaatccaccatctcttcaaggtgaacacgttcatttgggtttagacgaccgacggttttatgacctttcaacacatctgtcatgtcatggttg 20235755  T
Q  295 tg 296  Q
    ||    
T  20235756 tg 20235757  T

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Target: chr5; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 195 - 294
Target Start/End: Original strand, 13850169 - 13850268
Alignment:
Q  195 aacgtttgaatccactatctcatgaaggtgaacacattcatttgggtttagacgaccgacaattttatgacctttcaacacatcagtcatgtcatggttg 294  Q
    ||||||||||||||| ||||| | ||||||||||| ||||||||| ||||||||||||||  |||||||||||||||||||||| || ||||||||||||    
T  13850169 aacgtttgaatccaccatctcttcaaggtgaacacgttcatttggatttagacgaccgacggttttatgacctttcaacacatctgtaatgtcatggttg 13850268  T

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Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 198 - 296
Target Start/End: Original strand, 23351856 - 23351955
Alignment:
Q  198 gtttgaatccactatctcatgaaggtgaacacattcatttgggtttagacgaccgacaattttatgacc-tttcaacacatcagtcatgtcatggttgtg 296  Q
    |||||||||||| ||||| | ||||||||||| |||||||||||||||| |||||||  |||||||||| |||||||||||| |||||||||||||||||    
T  23351856 gtttgaatccaccatctcttcaaggtgaacacgttcatttgggtttagaagaccgacgcttttatgaccttttcaacacatctgtcatgtcatggttgtg 23351955  T

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Target: chr5; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 90 - 178
Target Start/End: Complemental strand, 15389713 - 15389624
Alignment:
Q  90 attgaaataatttaaatttataaa-taaaattcatcaaacaacctaacatattaatagttaaaatcctttaatcaataaatattgacttt 178  Q
    |||||||||||||||||||||||| ||||| ||||  ||| || || ||||||||| ||||||||||||||| |||||||||||||||||    
T  15389713 attgaaataatttaaatttataaaataaaaatcattgaactacatatcatattaatggttaaaatcctttaaccaataaatattgacttt 15389624  T

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Target: chr5; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 231 - 296
Target Start/End: Original strand, 31049917 - 31049982
Alignment:
Q  231 ttcatttgggtttagacgaccgacaattttatgacctttcaacacatcagtcatgtcatggttgtg 296  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||   |||||||||||||||    
T  31049917 ttcatttgggtttagacgtccgacaattttatgacctttcaacacctcttccatgtcatggttgtg 31049982  T

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Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 94 - 178
Target Start/End: Complemental strand, 5813809 - 5813725
Alignment:
Q  94 aaataatttaaatttataaataaaattcatcaaacaacctaacatattaatagttaaaatcctttaatcaataaatattgacttt 178  Q
    ||||||||||||||||||||  |||||||| |||| || || ||||||||| ||||||||| ||||| ||| |||||||||||||    
T  5813809 aaataatttaaatttataaaataaattcattaaactacataccatattaatggttaaaatcttttaaccaacaaatattgacttt 5813725  T

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Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 296
Target Start/End: Original strand, 31063001 - 31063066
Alignment:
Q  231 ttcatttgggtttagacgaccgacaattttatgacctttcaacacatcagtcatgtcatggttgtg 296  Q
    |||||||||||||||| | ||||| |||||||||||||||||||| ||   |||||||||||||||    
T  31063001 ttcatttgggtttagatgtccgacgattttatgacctttcaacacctcttccatgtcatggttgtg 31063066  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 296
Target Start/End: Original strand, 31045130 - 31045183
Alignment:
Q  243 tagacgaccgacaattttatgacctttcaacacatcagtcatgtcatggttgtg 296  Q
    |||||| ||||| |||||||||||||||||||| ||   |||||||||||||||    
T  31045130 tagacgtccgacgattttatgacctttcaacacctcttccatgtcatggttgtg 31045183  T

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Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 198 - 296
Target Start/End: Complemental strand, 15891165 - 15891067
Alignment:
Q  198 gtttgaatccactatctcatgaaggtgaacacattcatttgggtttagacgaccgacaattttatgacctttcaacacatcagtcatgtcatggttgtg 296  Q
    |||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||    
T  15891165 gtttgaatccaccatctcttgaaggtgaacacgttcatttgggtttagacgaccgacagttttatgacctttcaacacatctctcatgtcatggttgtg 15891067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 195 - 296
Target Start/End: Complemental strand, 19216312 - 19216211
Alignment:
Q  195 aacgtttgaatccactatctcatgaaggtgaacacattcatttgggtttagacgaccgacaattttatgacctttcaacacatcagtcatgtcatggttg 294  Q
    ||||||||||||||| ||||| | ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||    
T  19216312 aacgtttgaatccaccatctcttcaaggtgaacacgttcatttgggtttagacgaccgacgattttatgacctttcaacacatctgtcctgtcatggttg 19216213  T
Q  295 tg 296  Q
    ||    
T  19216212 tg 19216211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 195 - 278
Target Start/End: Original strand, 41256921 - 41257004
Alignment:
Q  195 aacgtttgaatccactatctcatgaaggtgaacacattcatttgggtttagacgaccgacaattttatgacctttcaacacatc 278  Q
    ||||||||||||||| ||||| | ||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||    
T  41256921 aacgtttgaatccaccatctcttcaaggtgaacacgttcatttgggtttagacgaccgacagttttatgatctttcaacacatc 41257004  T

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Target: chr7; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 76 - 178
Target Start/End: Complemental strand, 20420513 - 20420410
Alignment:
Q  76 taagtatatatccgattgaaataatttaaatttataaa-taaaattcatcaaacaacctaacatattaatagttaaaatcctttaatcaataaatattga 174  Q
    ||||||||| ||  ||| |||||||||||||||||||| ||||| |||| |||| || || ||||||||| ||||||||||||||| |||||||||||||    
T  20420513 taagtatatctcatattaaaataatttaaatttataaaataaaaatcattaaactacataccatattaatggttaaaatcctttaaccaataaatattga 20420414  T
Q  175 cttt 178  Q
    ||||    
T  20420413 cttt 20420410  T

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Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 90 - 178
Target Start/End: Complemental strand, 20438097 - 20438008
Alignment:
Q  90 attgaaataatttaaatttataaa-taaaattcatcaaacaacctaacatattaatagttaaaatcctttaatcaataaatattgacttt 178  Q
    |||||||||||||||||||||||| ||||| |||| |||| || || ||||||||| | ||||||||||||| |||||||||| ||||||    
T  20438097 attgaaataatttaaatttataaaataaaaatcattaaactacataccatattaatggctaaaatcctttaaccaataaatatagacttt 20438008  T

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Target: chr7; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 89 - 160
Target Start/End: Complemental strand, 23337796 - 23337725
Alignment:
Q  89 gattgaaataatttaaatttataaataaaattcatcaaacaacctaacatattaatagttaaaatcctttaa 160  Q
    ||||||||||| ||| |||| |||||||||||||| ||||||  |||||||||||| |||||||||||||||    
T  23337796 gattgaaataacttatatttttaaataaaattcattaaacaaaataacatattaatggttaaaatcctttaa 23337725  T

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Target: chr1 (Bit Score: 74; Significance: 6e-34; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 195 - 296
Target Start/End: Original strand, 45909976 - 45910077
Alignment:
Q  195 aacgtttgaatccactatctcatgaaggtgaacacattcatttgggtttagacgaccgacaattttatgacctttcaacacatcagtcatgtcatggttg 294  Q
    ||||||||||||||| ||||| | ||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||    
T  45909976 aacgtttgaatccaccatctcttcaaggtgaacacgttcatttgggtttagacgaccgacagttttatgaactttcaacacatctgtcatgtcatggttg 45910075  T
Q  295 tg 296  Q
    ||    
T  45910076 tg 45910077  T

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Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 195 - 296
Target Start/End: Original strand, 44712551 - 44712652
Alignment:
Q  195 aacgtttgaatccactatctcatgaaggtgaacacattcatttgggtttagacgaccgacaattttatgacctttcaacacatcagtcatgtcatggttg 294  Q
    ||||||||||||||| ||||| | ||||||||||| |||||||||||||||| |||||||  ||||||||||||||| |||||| |||||||||||||||    
T  44712551 aacgtttgaatccaccatctcttcaaggtgaacacgttcatttgggtttagatgaccgacggttttatgacctttcagcacatctgtcatgtcatggttg 44712650  T
Q  295 tg 296  Q
    ||    
T  44712651 tg 44712652  T

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Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 81 - 160
Target Start/End: Complemental strand, 49484459 - 49484380
Alignment:
Q  81 atatatccgattgaaataatttaaatttataaataaaattcatcaaacaacctaacatattaatagttaaaatcctttaa 160  Q
    ||||||| ||||||||||||||||||| ||||||||||||||| ||||||| ||| |||||||| |||||||||||||||    
T  49484459 atatatcagattgaaataatttaaattcataaataaaattcattaaacaacataatatattaatggttaaaatcctttaa 49484380  T

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Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 195 - 296
Target Start/End: Complemental strand, 50516116 - 50516015
Alignment:
Q  195 aacgtttgaatccactatctcatgaaggtgaacacattcatttgggtttagacgaccgacaattttatgacctttcaacacatcagtcatgtcatggttg 294  Q
    ||||||| ||||||| ||||| | ||||||||||| ||||||| |||| ||||||||| |  |||||||||||||||||| ||| | |||||||||||||    
T  50516116 aacgtttcaatccaccatctcttcaaggtgaacacgttcatttaggttaagacgaccggcggttttatgacctttcaacatatctgccatgtcatggttg 50516017  T
Q  295 tg 296  Q
    ||    
T  50516016 tg 50516015  T

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Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 211 - 296
Target Start/End: Original strand, 16767242 - 16767327
Alignment:
Q  211 atctcatgaaggtgaacacattcatttgggtttagacgaccgacaattttatgacctttcaacacatcagtcatgtcatggttgtg 296  Q
    ||||||| |||||| |||| ||||||||| |||||||  |||||| ||||||||||||||| |||||| | |||||||||||||||    
T  16767242 atctcataaaggtgcacacgttcatttggatttagacttccgacagttttatgacctttcagcacatctgccatgtcatggttgtg 16767327  T

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Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 211 - 296
Target Start/End: Complemental strand, 10548468 - 10548383
Alignment:
Q  211 atctcatgaaggtgaacacattcatttgggtttagacgaccgacaattttatgacctttcaacacatcagtcatgtcatggttgtg 296  Q
    ||||||| |||||||| || ||||||| |||||||||| | |||  |||||||||||||||||||||| | ||| |||||||||||    
T  10548468 atctcataaaggtgaatacgttcatttaggtttagacgtctgacggttttatgacctttcaacacatctgccatctcatggttgtg 10548383  T

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Target: chr8 (Bit Score: 71; Significance: 4e-32; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 198 - 296
Target Start/End: Original strand, 9139970 - 9140068
Alignment:
Q  198 gtttgaatccactatctcatgaaggtgaacacattcatttgggtttagacgaccgacaattttatgacctttcaacacatcagtcatgtcatggttgtg 296  Q
    |||||||||||| ||||| | ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||    
T  9139970 gtttgaatccaccatctcttcaaggtgaacacgttcatttgggtttagacgaccgacagttttatgacctttcaacacatctgtcatatcatggttgtg 9140068  T

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Target: chr8; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 198 - 296
Target Start/End: Original strand, 23709978 - 23710076
Alignment:
Q  198 gtttgaatccactatctcatgaaggtgaacacattcatttgggtttagacgaccgacaattttatgacctttcaacacatcagtcatgtcatggttgtg 296  Q
    ||||| |||||| ||||| |||| |||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||    
T  23709978 gtttgcatccaccatctcttgaacgtgaacacgttcatttgggtttagacgaccgacagttttatgacctttcaaaacatctgtcatgtcatggttgtg 23710076  T

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Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 7 - 196
Target Start/End: Complemental strand, 2086290 - 2086105
Alignment:
Q  7 actagtctaaatacccggcgttttctggattaattattatacacaaagttttgtatttgggtacacatataagtatatatccgattgaaataatttaaat 106  Q
    ||||||||||||||| || ||| || || |||||||||||| | |||||||| | || ||| | ||||| |    ||||||   ||||||||||||||||    
T  2086290 actagtctaaataccaggggttgtccgggttaattattataaataaagttttatgttcgggcaaacataaa----tatatcatgttgaaataatttaaat 2086195  T
Q  107 ttataaataaaattcatcaaacaacctaacatattaatagttaaaatcctttaatcaataaatattgacttttgttttgcacttaaataa 196  Q
    | ||||||||||||||| ||||||| |||||||||||| |||||||||||| || ||| |||||| |||||| |||| |||| |||||||    
T  2086194 tcataaataaaattcattaaacaacataacatattaatggttaaaatccttaaaccaacaaatatcgactttagtttcgcacctaaataa 2086105  T

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Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 195 - 296
Target Start/End: Complemental strand, 754859 - 754759
Alignment:
Q  195 aacgtttgaatccactatctcatgaaggtgaacacattcatttgggtttagacgaccgacaattttatgacctttcaacacatcagtcatgtcatggttg 294  Q
    ||||||||||||||  ||||| ||||||||||||| ||||||||||||||||| |||| |  |||||||||||||||||||||  |||||||||||||||    
T  754859 aacgtttgaatccaacatctcttgaaggtgaacacgttcatttgggtttagacaaccg-cggttttatgacctttcaacacatttgtcatgtcatggttg 754761  T
Q  295 tg 296  Q
    ||    
T  754760 tg 754759  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 167
Target Start/End: Complemental strand, 35122109 - 35122035
Alignment:
Q  94 aaataatttaaatttataaa-taaaattcatcaaacaacctaacatattaatagttaaaatcctttaatcaataa 167  Q
    |||||||||||||||||||| ||||| |||| |||| || ||  |||||||| ||||||||||||||| ||||||    
T  35122109 aaataatttaaatttataaaataaaaatcattaaactacatactatattaatcgttaaaatcctttaaccaataa 35122035  T

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Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 199 - 296
Target Start/End: Original strand, 17311961 - 17312058
Alignment:
Q  199 tttgaatccactatctcatgaaggtgaacacattcatttgggtttagacgaccgacaattttatgacctttcaacacatcagtcatgtcatggttgtg 296  Q
    ||||||||||| || || | ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  17311961 tttgaatccaccatttcttcaaggtgaacacgttcatttgggtttagacgaccgacagttttatgacctttcaacacatctgtcatgtcatggttgtg 17312058  T

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Target: chr2; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 195 - 293
Target Start/End: Complemental strand, 38620029 - 38619931
Alignment:
Q  195 aacgtttgaatccactatctcatgaaggtgaacacattcatttgggtttagacgaccgacaattttatgacctttcaacacatcagtcatgtcatggtt 293  Q
    ||||||||||||||| ||||| | ||||||||||| |||||||| |||||||||||||||  |||||||||||||||||||||| ||||||||||||||    
T  38620029 aacgtttgaatccaccatctcttcaaggtgaacacgttcatttgcgtttagacgaccgacggttttatgacctttcaacacatctgtcatgtcatggtt 38619931  T

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Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 219 - 292
Target Start/End: Original strand, 19991035 - 19991108
Alignment:
Q  219 aaggtgaacacattcatttgggtttagacgaccgacaattttatgacctttcaacacatcagtcatgtcatggt 292  Q
    |||||| ||||||||||||||||||||||| |||| | |||||||||||||||||||||  | |||||||||||    
T  19991035 aaggtgcacacattcatttgggtttagacgtccgaaagttttatgacctttcaacacatttgccatgtcatggt 19991108  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 211 - 275
Target Start/End: Original strand, 19990949 - 19991013
Alignment:
Q  211 atctcatgaaggtgaacacattcatttgggtttagacgaccgacaattttatgacctttcaacac 275  Q
    ||||||| |||||| ||||||||||||||||||||||| | || | |||||||||||||||||||    
T  19990949 atctcataaaggtgcacacattcatttgggtttagacgtctgaaagttttatgacctttcaacac 19991013  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 143
Target Start/End: Complemental strand, 26478202 - 26478148
Alignment:
Q  89 gattgaaataatttaaatttataaataaaattcatcaaacaacctaacatattaa 143  Q
    |||||||||||||||||||| ||||||||| |||| || |||| || ||||||||    
T  26478202 gattgaaataatttaaatttttaaataaaaatcattaaccaacatatcatattaa 26478148  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 296
Target Start/End: Complemental strand, 10924982 - 10924897
Alignment:
Q  211 atctcatgaaggtgaacacattcatttgggtttagacgaccgacaattttatgacctttcaacacatcagtcatgtcatggttgtg 296  Q
    |||||||||| ||| | || |||||||||||||||| | |||||  ||||||||| ||||||||| |    |||||||||||||||    
T  10924982 atctcatgaaagtgtatacgttcatttgggtttagaagtccgacggttttatgacatttcaacaccttttccatgtcatggttgtg 10924897  T

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Target: scaffold0528 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0528
Description:

Target: scaffold0528; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 231 - 296
Target Start/End: Complemental strand, 11463 - 11398
Alignment:
Q  231 ttcatttgggtttagacgaccgacaattttatgacctttcaacacatcagtcatgtcatggttgtg 296  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||   |||||||||||||||    
T  11463 ttcatttgggtttagacgtccgacaattttatgacctttcaacacctcttccatgtcatggttgtg 11398  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 277
Target Start/End: Original strand, 24132649 - 24132715
Alignment:
Q  211 atctcatgaaggtgaacacattcatttgggtttagacgaccgacaattttatgacctttcaacacat 277  Q
    ||||||| ||| || ||||||||||||||||||||||| |||||| |||| |||  |||||||||||    
T  24132649 atctcataaagatgcacacattcatttgggtttagacgtccgacagttttttgagttttcaacacat 24132715  T

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