View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19230_low_17 (Length: 308)
Name: NF19230_low_17
Description: NF19230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19230_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 15 - 294
Target Start/End: Original strand, 21181016 - 21181302
Alignment:
| Q |
15 |
acttatgacttgttgctttcttatgcaaggaaaagttttggaacagattaatattaagttgtggaatgaagatgatggtaaagaagattttcgacgtgga |
114 |
Q |
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| T |
21181016 |
acttatgacttgttgctttcttatgcaaggaaaagttttggaacagattaatattaagttgtggaatgaagatgatggtaaagaagaatttcgacgtgga |
21181115 |
T |
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| Q |
115 |
tctgcacaacttttaatcaaagctcaaaagggttcaaagaatttgcaaatatcaattgattgagtaatgtgatcttgtaatattagattattcggtaaag |
214 |
Q |
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| T |
21181116 |
tctgcacaacttttagtcaaagctcaaaagggttcaaagaatttgcaaatatcaattgattgagtaatgtgatcttgtaatattagattattcgataaag |
21181215 |
T |
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| Q |
215 |
tcttgttccatgattctatctttcgtacttaac-----tgtgttcaataaagtatttttccgtaatcc--ctcattccaaaatatga |
294 |
Q |
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| T |
21181216 |
tcttgttccatgattctatctttcgtacttaactaaggtgtgttcaataaagtattgttccgtaatccctctcattccaaaatatga |
21181302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 7e-43; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 15 - 177
Target Start/End: Complemental strand, 40993897 - 40993738
Alignment:
| Q |
15 |
acttatgacttgttgctttcttatgcaaggaaaagttttggaacagattaatattaagttgtggaatgaagatgatggtaaagaagattttcgacgtgga |
114 |
Q |
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| T |
40993897 |
acttatgacttgttgctttcttatgcaaggaaaagttttggaacagattaatattaagttgtggaatgaa---gatggaaaggtggaatatcgccatgga |
40993801 |
T |
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| Q |
115 |
tctgcacaacttttaatcaaagctcaaaagggttcaaagaatttgcaaatatcaattgattga |
177 |
Q |
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| T |
40993800 |
cgtgcacaacttttagtcaatgctccaaagcgttcaaagaatttgcgaatatcaattgattga |
40993738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 186 - 248
Target Start/End: Complemental strand, 40993665 - 40993603
Alignment:
| Q |
186 |
atcttgtaatattagattattcggtaaagtcttgttccatgattctatctttcgtacttaact |
248 |
Q |
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| T |
40993665 |
atcttttaatattagattattcaataaagtcttgttccatgattctatctttcgtacttaact |
40993603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 40986137 - 40986064
Alignment:
| Q |
15 |
acttatgacttgttgctttcttatgcaaggaaaagttttggaacagattaatattaagttgtggaatgaagatg |
88 |
Q |
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| T |
40986137 |
acttaggacttgttgctttctaatgaaagggaaagctttggaacagattaatattaagttgtcgaatgaagatg |
40986064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 40989509 - 40989433
Alignment:
| Q |
15 |
acttatgacttgttgctttcttatgcaaggaaaagttttggaacagatta------atattaagttgtggaatgaag |
85 |
Q |
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| T |
40989509 |
acttataacttgttgctttcttatgcaaggaatttttttggaacatattattaattatattaagttgtggaatgaag |
40989433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 218
Target Start/End: Complemental strand, 40985946 - 40985902
Alignment:
| Q |
174 |
ttgagtaatgtgatcttgtaatattagattattcggtaaagtctt |
218 |
Q |
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| T |
40985946 |
ttgagtaatgtgatcttgtaatactagattattcaataaagtctt |
40985902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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