View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19230_low_2 (Length: 693)

Name: NF19230_low_2
Description: NF19230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19230_low_2
NF19230_low_2
[»] chr3 (3 HSPs)
chr3 (450-677)||(523485-523712)
chr3 (9-249)||(523913-524153)
chr3 (348-399)||(523763-523814)
[»] chr4 (12 HSPs)
chr4 (450-611)||(356831-356992)
chr4 (488-611)||(364613-364736)
chr4 (88-243)||(356480-356635)
chr4 (86-243)||(359242-359400)
chr4 (450-611)||(359596-359744)
chr4 (524-611)||(674186-674272)
chr4 (618-677)||(364780-364839)
chr4 (619-669)||(357027-357077)
chr4 (618-670)||(359778-359830)
chr4 (628-677)||(674328-674377)
chr4 (348-381)||(356737-356770)
chr4 (348-381)||(357746-357779)
[»] chr8 (2 HSPs)
chr8 (524-611)||(21263746-21263832)
chr8 (628-677)||(21263641-21263690)


Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-125; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 450 - 677
Target Start/End: Complemental strand, 523712 - 523485
Alignment:
Q  450 aatggtgattagaattaggggagggtacctagttgtgagagtgctgtttaatggtgatgaggaggggagggtaaaatgggagcggtaagtttcttttgcc 549  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  523712 aatggtgattagaattaggggagggtacctagttgtgagagtgctgtttaatggtgatgaggaggggagggtaaaatgggagcggtaagtttcttttgcc 523613  T
Q  550 tttgtgataatagtaatgtaaggagtgaattttttgtgcattatagaaatgctggtaagatggatcatcatatcaattattcagcgatccatgttaatgc 649  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  523612 tttgtgataatagtaatgtaaggagtgaattttttgtgcattatagaaatgctggtaagatggatcatcatatcaattattcagcgatccatgttaatgc 523513  T
Q  650 actctttattggaaccctttaggtttat 677  Q
    ||||||||||||||||||||||||||||    
T  523512 actctttattggaaccctttaggtttat 523485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 9 - 249
Target Start/End: Complemental strand, 524153 - 523913
Alignment:
Q  9 agcatagggtcaaggattatgggcagacagattgatgagcaacgtgttacgcaaggttggagcaacgatatcgatgtagatttgaatgaaaggcagattc 108  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  524153 agcattgggtcaaggattatgggcagacagattgatgagcaacgtgttacgcaaggttggagcaacgatatcgatgtagatttgaatgaaaggcagattc 524054  T
Q  109 aatctcttacggttacttcttacttgtcctgcaagattgggaacagtttcattggggcatagatcgatggatggtttgctttgcnnnnnnnaccacttaa 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||    
T  524053 aatctcttacggttacttcttacttgtcctgcaagattgggaacagtttcattggggcatagatcgatggatggtttgctttgctttttttaccacttaa 523954  T
Q  209 tttgaatctcttagtagtattaatcatttacattgttgctg 249  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  523953 tttgaatctcttagtagtattaatcatttacattgttgctg 523913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 348 - 399
Target Start/End: Complemental strand, 523814 - 523763
Alignment:
Q  348 ttaccacttgcattgtgtgtttgcatgtgatgttatgagtaaaaacattgga 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  523814 ttaccacttgcattgtgtgtttgcatgtgatgttatgagtaaaaacattgga 523763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 126; Significance: 1e-64; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 450 - 611
Target Start/End: Original strand, 356831 - 356992
Alignment:
Q  450 aatggtgattagaattaggggagggtacctagttgtgagagtgctgtttaatggtgatgaggaggggagggtaaaatgggagcggtaagtttcttttgcc 549  Q
    |||||| |||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||    
T  356831 aatggtaattagaattaggggagggtacctagtcgtgggagtgttgtttaatggtgatgaggaggggagggtaaaatgggagcggtaagtttattttccc 356930  T
Q  550 tttgtgataatagtaatgtaaggagtgaattttttgtgcattatagaaatgctggtaagatg 611  Q
    |||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  356931 tttgtgataataataatgtaaggagtaaattttttgtgcattatagaaacgctggtaagatg 356992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 488 - 611
Target Start/End: Original strand, 364613 - 364736
Alignment:
Q  488 gagtgctgtttaatggtgatgaggaggggagggtaaaatgggagcggtaagtttcttttgcctttgtgataatagtaatgtaaggagtgaattttttgtg 587  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||    
T  364613 gagtgctgtttaatggtgatgaggagggtagggtaaaatgggagcggtaagtttcttttccctttgtgataatagtaatgtaaggagtaaaatttttgtg 364712  T
Q  588 cattatagaaatgctggtaagatg 611  Q
    ||||||||||||||||||||||||    
T  364713 cattatagaaatgctggtaagatg 364736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 88 - 243
Target Start/End: Original strand, 356480 - 356635
Alignment:
Q  88 atttgaatgaaaggcagattcaatctcttacggttacttcttacttgtcctgcaagattgggaacagtttcattggggcatagatcgatggatggtttgc 187  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||    
T  356480 atttgaatgaaaggcatattcaatctcttacggttacttcttacttgtcctgcaatattgggaacagtttcattgggccatagatcgatggatgttttgc 356579  T
Q  188 tttgcnnnnnnnaccacttaatttgaatctcttagtagtattaatcatttacattg 243  Q
    |||||       ||||||| ||||||||||||||||||||| ||||||||| ||||    
T  356580 tttgctttttttaccacttgatttgaatctcttagtagtatcaatcatttaaattg 356635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 86 - 243
Target Start/End: Original strand, 359242 - 359400
Alignment:
Q  86 agatttgaatgaaaggcagattcaatctcttacggttacttcttacttgtcctgcaagattgggaacagtttcattggggcatagatcgatggatggttt 185  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||| |||    
T  359242 agatttgaatgaaaggcatattcaatctcttacggttacttcttacttgtcctgcaatattgggaacagtttcattgggccatagaccgatggatgtttt 359341  T
Q  186 gctttgc-nnnnnnnaccacttaatttgaatctcttagtagtattaatcatttacattg 243  Q
    ||||| |        ||||||| ||||||||||||||||||||| ||||||||| ||||    
T  359342 gctttacttttttttaccacttgatttgaatctcttagtagtatcaatcatttaaattg 359400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 450 - 611
Target Start/End: Original strand, 359596 - 359744
Alignment:
Q  450 aatggtgattagaattaggggagggtacctagttgtgagagtgctgtttaatggtgatgaggaggggagggtaaaatgggagcggtaagtttcttttgcc 549  Q
    |||||| |||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||| |             ||||||||||||| ||    
T  359596 aatggtaattagaattaggggagggtacctagtcgtgggagtgttgtttaatggtgatgaggaggggagag-------------gtaagtttcttttccc 359682  T
Q  550 tttgtgataatagtaatgtaaggagtgaattttttgtgcattatagaaatgctggtaagatg 611  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  359683 tttgtgataatagtaatgtaaggagtaaattttttgtgcattatagaaatgctggtaagatg 359744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 524 - 611
Target Start/End: Original strand, 674186 - 674272
Alignment:
Q  524 aatgggagcggtaagtttcttttgcctttgtgataatagtaatgtaaggagtgaattttttgtgcattatagaaatgctggtaagatg 611  Q
    ||||| ||||||||||||||||| ||||||| || || |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  674186 aatggaagcggtaagtttctttttcctttgtaatgattgtaatgtaag-agtgaattttttgtgcattatagaaatgctggtaagatg 674272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 618 - 677
Target Start/End: Original strand, 364780 - 364839
Alignment:
Q  618 catatcaattattcagcgatccatgttaatgcactctttattggaaccctttaggtttat 677  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  364780 catatcaattattcagcgatccatgttaatgtactctttattggaaccctttagatttat 364839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 619 - 669
Target Start/End: Original strand, 357027 - 357077
Alignment:
Q  619 atatcaattattcagcgatccatgttaatgcactctttattggaacccttt 669  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  357027 atatcaattattcagcgatccatgttaatgcactctttattggaacccttt 357077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 618 - 670
Target Start/End: Original strand, 359778 - 359830
Alignment:
Q  618 catatcaattattcagcgatccatgttaatgcactctttattggaacccttta 670  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  359778 catatcaattattcagcgatccatgttaatgcattctttattggaacccttta 359830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 628 - 677
Target Start/End: Original strand, 674328 - 674377
Alignment:
Q  628 attcagcgatccatgttaatgcactctttattggaaccctttaggtttat 677  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  674328 attcagcgatccatcttaatgcactctttattggaaccctttaggtttat 674377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 348 - 381
Target Start/End: Original strand, 356737 - 356770
Alignment:
Q  348 ttaccacttgcattgtgtgtttgcatgtgatgtt 381  Q
    ||||||||||||||||||||||||||||||||||    
T  356737 ttaccacttgcattgtgtgtttgcatgtgatgtt 356770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 381
Target Start/End: Original strand, 357746 - 357779
Alignment:
Q  348 ttaccacttgcattgtgtgtttgcatgtgatgtt 381  Q
    ||||||||| ||||||||||||||||||||||||    
T  357746 ttaccactttcattgtgtgtttgcatgtgatgtt 357779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 524 - 611
Target Start/End: Complemental strand, 21263832 - 21263746
Alignment:
Q  524 aatgggagcggtaagtttcttttgcctttgtgataatagtaatgtaaggagtgaattttttgtgcattatagaaatgctggtaagatg 611  Q
    ||||| ||||||||||||||||| ||||||| || || |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  21263832 aatggaagcggtaagtttctttttcctttgtaatgattgtaatgtaag-agtgaattttttgtgcattatagaaatgctggtaagatg 21263746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 628 - 677
Target Start/End: Complemental strand, 21263690 - 21263641
Alignment:
Q  628 attcagcgatccatgttaatgcactctttattggaaccctttaggtttat 677  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  21263690 attcagcgatccatcttaatgcactctttattggaaccctttaggtttat 21263641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University