View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19230_low_20 (Length: 287)
Name: NF19230_low_20
Description: NF19230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19230_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 102; Significance: 1e-50; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 35882473 - 35882302
Alignment:
| Q |
1 |
gtgtatatcataattaagaataatataaaaacagagaacaaaaat-tcatgtaccaacgaccttgtactctggagccaaaacatttttcacaatgacaga |
99 |
Q |
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| T |
35882473 |
gtgtatatcctagctaagaataatataaaaacatagaacaaaaacatcatgtacca--gaccttgtactctggagcccaaacatttttcacaatgacaga |
35882376 |
T |
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| Q |
100 |
gtttaaatttgatgacacggtttagtgtgtagagctccccccatatcgctcattaattcatctatcttaacctgca |
175 |
Q |
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| T |
35882375 |
gtttaaatctgatg--acggtgtagtgtgtagagctccccccatttcaatcattaattcatctatcttaacctgca |
35882302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 35900385 - 35900288
Alignment:
| Q |
1 |
gtgtatatcataattaagaataatataaaaacagagaacaaaaattcatgtacca-acgaccttgtactctggagccaaaacatttttcacaatgaca |
97 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
35900385 |
gtgtatatcatagttaagaataatataaaaacagagaacaaaaattcatgtaccagacgaccttgtactctggagccaaaacatttttcacaatgaca |
35900288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 142 - 238
Target Start/End: Complemental strand, 35900287 - 35900191
Alignment:
| Q |
142 |
atatcgctcattaattcatctatcttaacctgcannnnnnntgaaggataaaataccaagagaaataactgaaaacttatgagcgtttcaataaaag |
238 |
Q |
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| T |
35900287 |
atatcgctcattaattcatctatcttaacctgcagggggagtgaaggataaaataccaagagaaataactgaaaacttatgagcgtttcaataaaag |
35900191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 231 - 274
Target Start/End: Complemental strand, 35900182 - 35900139
Alignment:
| Q |
231 |
aataaaagcccaagtagtcttggacttgtcaaccatatggagaa |
274 |
Q |
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| T |
35900182 |
aataaaagcccaagtagtcttggacttgtcaaccatatggagaa |
35900139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 175
Target Start/End: Original strand, 10211850 - 10212016
Alignment:
| Q |
3 |
gtatatcataattaagaataatataaaaacagagaacaaaaa-ttcatgtaccaacgaccttgtactctggagccaaaacatttttcacaatgacagagt |
101 |
Q |
| |
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|||| ||||| || |||||||||||||| | |||||||||| |||| |||||| ||||||||||| | ||||||||||||||||||| |||||| ||| |
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| T |
10211850 |
gtatgtcatagttgagaataatataaaagtacagaacaaaaacttcaggtacca--gaccttgtacttttgagccaaaacatttttcacgatgacaaagt |
10211947 |
T |
|
| Q |
102 |
ttaaatttgatgacacggtttagtgtgtagagctccccccatatcgctcattaattcatctatcttaacctgca |
175 |
Q |
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| T |
10211948 |
tcaaatctgacg--tcggttta---tgtagagctccccccatttcagtcactaattcttctatcttaacctgca |
10212016 |
T |
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