View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19230_low_22 (Length: 255)
Name: NF19230_low_22
Description: NF19230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19230_low_22 |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 15 - 255
Target Start/End: Complemental strand, 46224671 - 46224431
Alignment:
| Q |
15 |
atcacagaaccattcaaaacaaattcatagcacatcatctgaataaggtaattcggcataacaattgactttcataaaatcacagtttaataaaattagg |
114 |
Q |
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| T |
46224671 |
atcacagaaccattcaaaacaaattcatagcacatcatctgaataaggtaattcggcataacaattgactttcataaaatcacagtttaataaaattagg |
46224572 |
T |
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| Q |
115 |
ttttcattaaagtcacttgtgctaaataaattatttttctaattcaaaattaatataacaatcaagaacacgaagttaacaaacaattatcacnnnnnnn |
214 |
Q |
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| T |
46224571 |
ttttcattaaagtcacttgtgctaaataaattatttttctaattcaaaattaatataacaatcaagaacacgaagttaacaaacaattatcacaaaaaaa |
46224472 |
T |
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| Q |
215 |
caagaaaactacgaaaattaacaacccttcactacccacat |
255 |
Q |
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| T |
46224471 |
caagaaaactacgaaaattaacaacccttcactacccacat |
46224431 |
T |
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Target: scaffold0009 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 255
Target Start/End: Original strand, 160380 - 160418
Alignment:
| Q |
217 |
agaaaactacgaaaattaacaacccttcactacccacat |
255 |
Q |
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| T |
160380 |
agaaaacaatgaaaattaacaacccttcactacccacat |
160418 |
T |
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