View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19230_low_25 (Length: 247)
Name: NF19230_low_25
Description: NF19230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19230_low_25 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 24836302 - 24836097
Alignment:
| Q |
1 |
tcaccaacatggaaatgattgatgcaatttacaacacttctttatacaaatttttcttatttctccaaagcataataatacttgtcttctatttctccaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24836302 |
tcaccaacatggaaatgattgatgcaatttacaacacttctttatacaaatttttcttatttctccaaagcataataatacttgtcttctatttctccaa |
24836203 |
T |
|
| Q |
101 |
tgtcaatctgcttgtaattgactataacatccgaaatagaatgagaaacatgattcaaatttccaaatatggttaccaactagtcaactactaaaacttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24836202 |
tgtcaatctgcttgtaattgactataacatccgaaatagaatgagaaacatgattcaaatttccaaatatggttaccaactagtcaactactaaaacttt |
24836103 |
T |
|
| Q |
201 |
gttacc |
206 |
Q |
| |
|
|||||| |
|
|
| T |
24836102 |
gttacc |
24836097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 193 - 240
Target Start/End: Complemental strand, 24836075 - 24836028
Alignment:
| Q |
193 |
aaaactttgttaccaaattatgattattaatgctactggcctcctatg |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24836075 |
aaaactttgttaccaaattatgattattaatgctactggcctcctatg |
24836028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University