View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19230_low_26 (Length: 238)
Name: NF19230_low_26
Description: NF19230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19230_low_26 |
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Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 11 - 223
Target Start/End: Original strand, 3845277 - 3845489
Alignment:
| Q |
11 |
agaatattgaatgtaaacagtcttgccacgaacctgagcaggctctgaagatgaagcataatatgaaaccattgaaattgcttgattcatttccgcctgg |
110 |
Q |
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| T |
3845277 |
agaatattgaatgtaaacagtcttgccacgaacctgagcaggctctgaagatgaagcataatatgaaaccattgaaattgcttgattcagttccgcctgg |
3845376 |
T |
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| Q |
111 |
taaagcatttatatttaagagcttagaaccttgagtaggagaatcaataaagcaccagatcaagatgtgtcatcgaatataagaaagcatatgatgcagc |
210 |
Q |
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| T |
3845377 |
taaagcatttatatttaagagcttagaaccttgagtaggagaatcaataaagcaccagatcaagatgtgtcatcgaatataagaaagcatatgatgcagc |
3845476 |
T |
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| Q |
211 |
acatgaacgaagt |
223 |
Q |
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| T |
3845477 |
acatgaacgaagt |
3845489 |
T |
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Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 12 - 97
Target Start/End: Original strand, 2884601 - 2884686
Alignment:
| Q |
12 |
gaatattgaatgtaaacagtcttgccacgaacctgagcaggctctgaagatgaagcataatatgaaaccattgaaattgcttgatt |
97 |
Q |
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|||||||| ||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2884601 |
gaatattgtatgtaaacagttttaccacgaacctgagcaggctctgaagatgaagcgtaatatgaaaccattgaaattgcttgatt |
2884686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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