View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19230_low_28 (Length: 237)
Name: NF19230_low_28
Description: NF19230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19230_low_28 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 24836649 - 24836422
Alignment:
| Q |
1 |
atattgttaaagcatttgattgatgaataattatttttcacatttaccaaatactaatttcatttgaggagcctgaaatattcgtattacttctagtgtt |
100 |
Q |
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| T |
24836649 |
atattgttaaagcatttgattgatgaataattatttttcacatttaccaaatactaatttcatttgaggagcctgaaatattcgta---------gtgtt |
24836559 |
T |
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| Q |
101 |
gcaattgcaagtcctttaatacaacatattgggaatatgaacactaacttgttgcataagaaaacatcaagtcggtttaagtcaggcatcacaacatatt |
200 |
Q |
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| T |
24836558 |
gcaattgcaagtcctttaatacaacatattgggaatatgaacactaacttgttgcataagaaaacatcaagttggtttaagtgaggcatcacaacatatt |
24836459 |
T |
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| Q |
201 |
gtgaatttcttcgagatgaagtcgaaactatttgttg |
237 |
Q |
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| T |
24836458 |
gtgaatttcttcgagatgaagtcgaaactatttgttg |
24836422 |
T |
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