View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19230_low_29 (Length: 237)
Name: NF19230_low_29
Description: NF19230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19230_low_29 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 29285874 - 29285642
Alignment:
| Q |
1 |
ttggaaaattatacaattacaatcaacgactttcactcatcgaaaatgcctccctttgtgaggaaaatggttaagatcctttgcgnnnnnnnncttcctt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
29285874 |
ttggaaaattatacaattacaatcaacgactttcactcatcgaaaatgcctccctttgtgaggaaaatggttaagatcctttgcgttttttttcttcctt |
29285775 |
T |
|
| Q |
101 |
ttccaatgtgctggaaatgttgcttgttcattctttagcaagggttgtcacatcattagccaatgtacttcttttattgatacatcatcaataaaaagat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29285774 |
ttccaatgtgctggaaatgttgcttgttcattctttagcaagggttgtcacatcattagccaatgtacttcttttattgatacatcatcaataaaaagat |
29285675 |
T |
|
| Q |
201 |
aagttcaaagagagaaagatttgatgatgtcca |
233 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |
|
|
| T |
29285674 |
aagttcaaagagagaaagatttgatgttgtcca |
29285642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 35233780 - 35233551
Alignment:
| Q |
1 |
ttggaaaattatacaattacaatcaacgactttcactcatcgaaaatgcctccctttgtgaggaaaatggttaagatcctttgc-gnnnnnnnncttcct |
99 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| | |||| | |
|
|
| T |
35233780 |
ttgggaaagtatacaattacaatcaacgactttcactcatcgaaaatgcctgcctttgtgaggaaaatagttaagatcctttacatctttttttcttctt |
35233681 |
T |
|
| Q |
100 |
tttccaatgtgctggaaatgttgcttgttcatt-ctttagcaagggttgtcacatcattagccaatgtacttcttttattgatacatcatcaataaaaag |
198 |
Q |
| |
|
|| ||| || |||| ||||||||||||||| |||| ||||||||||||||||| |||| | ||||||||||||| ||||| ||||||||||||| |
|
|
| T |
35233680 |
ctttcaacaagcgggaagtgttgcttgttcattgatttaacaagggttgtcacatcagtagctagtgtacttcttttaatgata---catcaataaaaag |
35233584 |
T |
|
| Q |
199 |
ataagttcaaagagagaaagatttgatgatgtc |
231 |
Q |
| |
|
||||||||||||||||||||| |||||| |||| |
|
|
| T |
35233583 |
ataagttcaaagagagaaagagttgatgttgtc |
35233551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 213
Target Start/End: Complemental strand, 35235953 - 35235874
Alignment:
| Q |
134 |
tttagcaagggttgtcacatcattagccaatgtacttctttt-attgatacatcatcaataaaaagataagttcaaagaga |
213 |
Q |
| |
|
||||||||||||| || |||||||| | ||||| |||||| ||||||||| ||| ||||||| |||||||||||||||| |
|
|
| T |
35235953 |
tttagcaagggtttccatgtcattagctagtgtacgtctttttattgatacaccattaataaaa-gataagttcaaagaga |
35235874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University