View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19230_low_3 (Length: 580)
Name: NF19230_low_3
Description: NF19230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19230_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 489; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 1 - 561
Target Start/End: Original strand, 3151317 - 3151877
Alignment:
| Q |
1 |
tccagcagatgaaactgaacattgatgatacaccaatggagtacttcttctgtagtgattgggagtgtactagaagagaaagtgagaatcttttgagcac |
100 |
Q |
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|||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
3151317 |
tccagcagatgaaactaaacattgatgacacaccaattgagtacttcttctgtagtgattgggagtgtactagaagagaaagtgggagtcttttgagcac |
3151416 |
T |
|
| Q |
101 |
tatgaggaatcaaaaatgctattgtggtggaatactggacaaagatgtagctccagaacatttgagtttaggaaatggctttgttgaagaaactgctact |
200 |
Q |
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|||||||||||||||||| ||||||||| || |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
3151417 |
tatgaggaatcaaaaatgttattgtggtagagtactggacaaagatgtggctccagaacatctgagtttaggaaatggctttgttgaagaaactgctact |
3151516 |
T |
|
| Q |
201 |
tttatcatttccgacgatcattttgtgatgcctaatgttttggcaacagttgtacatctacatcagaagcttggaattgataccaatgatactattgtcg |
300 |
Q |
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| T |
3151517 |
tttatcatttccgacgatctttttgtgatgcctaatgttttggcaacagttgtacatctacatcagaagcttggaattgataccaatgacactattgtcg |
3151616 |
T |
|
| Q |
301 |
aacaaactgtggaaataagcaagaaagaggtatgtttttctatcttctatataatctgtgattttgnnnnnnnnccttgtcatttgatgtttcatctctt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
3151617 |
aacaaactgtggaaataagcaagaaagaggtatgtttttctatcttctatataatctgtgattttgttttttttccttgtcatttgatgtttcatctctt |
3151716 |
T |
|
| Q |
401 |
gcttttgtaggtagttgatcttctcaaattatcattgttctcaaactcccctttgacagatttaatcttaaagaagaatcaatttgttgataaattttac |
500 |
Q |
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| T |
3151717 |
gcttttgtaggtagttgatcttctcaaattatcattgttctcaaactcccctttgacagatttaatcttaaagaagaatcaatttgttgataaattttac |
3151816 |
T |
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| Q |
501 |
caaagcaatcaaaaaatttgaatttggaaatggagagaaaccatctgaaaggggtaggtat |
561 |
Q |
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| T |
3151817 |
caaagcaatcaaaaaatttgaatttggaaatggagagaaaccatctgaaaggggtaggtat |
3151877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 189 - 271
Target Start/End: Original strand, 21194706 - 21194788
Alignment:
| Q |
189 |
gaaactgctacttttatcatttccgacgatcattttgtgatgcctaatgttttggcaacagttgtacatctacatcagaagct |
271 |
Q |
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| T |
21194706 |
gaaactgctgcatttattatttccgacgatctttgtgtgatgcctaatgattttggaacagttatacaactacttcaaaagct |
21194788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 271
Target Start/End: Original strand, 21199931 - 21200041
Alignment:
| Q |
161 |
tttgagtttaggaaatggctttgttgaagaaactgctacttttatcatttccgacgatcattttgtgatgcctaatgttttggcaacagttgtacatcta |
260 |
Q |
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| T |
21199931 |
tttgagcttaggaagcggttttgttaaggaaactgctgcatttattatttcagacgatctttatgtgatgcctaatgtttttgggacagttatacaacta |
21200030 |
T |
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| Q |
261 |
catcagaagct |
271 |
Q |
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| T |
21200031 |
cttcacaagct |
21200041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 161 - 273
Target Start/End: Original strand, 24284442 - 24284554
Alignment:
| Q |
161 |
tttgagtttaggaaatggctttgttgaagaaactgctacttttatcatttccgacgatcattttgtgatgcctaatgttttggcaacagttgtacatcta |
260 |
Q |
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||||||| ||||||||||||||| | | ||||| || || ||||| ||||| || |||| | |||||||||||||||||| | ||||||| ||| ||| |
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| T |
24284442 |
tttgagtctaggaaatggctttgctaaggaaaccgccacatttataatttctgatgatcttactgtgatgcctaatgtttttggaacagttataccacta |
24284541 |
T |
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| Q |
261 |
catcagaagcttg |
273 |
Q |
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| T |
24284542 |
cttcaaaagcttg |
24284554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 408 - 463
Target Start/End: Complemental strand, 24232036 - 24231981
Alignment:
| Q |
408 |
taggtagttgatcttctcaaattatcattgttctcaaactcccctttgacagattt |
463 |
Q |
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| T |
24232036 |
taggtagttgatcttctcaagttatcattaatctcaaagacccctttgaccgattt |
24231981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 189 - 339
Target Start/End: Complemental strand, 24232270 - 24232120
Alignment:
| Q |
189 |
gaaactgctacttttatcatttccgacgatcattttgtgatgcctaatgttttggcaacagttgtacatctacatcagaagcttggaattgataccaatg |
288 |
Q |
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|||| |||||||||||||||||| || |||| || ||| |||||||||||||| | | || | || |||||| ||| ||||||||| | || || | || |
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| T |
24232270 |
gaaaatgctacttttatcatttctgatgatctttgtgttatgcctaatgtttttggagcaagtttaaatctacttcaaaagcttggagtcgagactattg |
24232171 |
T |
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| Q |
289 |
atactattgtcgaacaaactgtggaaataagcaagaaagaggtatgttttt |
339 |
Q |
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| T |
24232170 |
atgctattgaggaacaagctgttgacatcaacaagaaagaggcatgctttt |
24232120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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